Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_J05
         (880 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|c...    27   2.7  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    27   3.5  
SPCC61.04c |||Rab GTPase binding|Schizosaccharomyces pombe|chr 3...    27   3.5  

>SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 801 PYIYGLLIVGTLSLIINAFV 860
           PY+Y LLI+G LSL++   V
Sbjct: 270 PYVYILLIIGFLSLVVFVLV 289


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1242

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = +1

Query: 604  VLLICWGIGTWLGVNGLYVQLPLARREAARGLGPAVLAWCWP 729
            +LL CW   T + V  L V +PL+       LG A+ AWC+P
Sbjct: 964  LLLFCWICSTLVTV--LLVFVPLS-------LGRAIYAWCFP 996


>SPCC61.04c |||Rab GTPase binding|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 227

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = +3

Query: 747 GPILYGLLGR--LRXHA-SDSPYIYGLLIVGTLSL 842
           GPIL+ LL    L  H  S   YIYG+ ++G+LSL
Sbjct: 97  GPILFCLLFSTFLSLHGRSHFGYIYGIALLGSLSL 131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,301,229
Number of Sequences: 5004
Number of extensions: 67913
Number of successful extensions: 160
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)