Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_J05
         (880 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81545-8|CAB04444.1|  327|Caenorhabditis elegans Hypothetical pr...    31   1.4  
U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical pr...    28   7.7  
U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical pr...    28   7.7  
U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>Z81545-8|CAB04444.1|  327|Caenorhabditis elegans Hypothetical
           protein F49H6.11 protein.
          Length = 327

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 31/144 (21%), Positives = 64/144 (44%), Gaps = 1/144 (0%)
 Frame = -3

Query: 506 VLSAISVFSRQVNQLIHKDEGFTRNFHIYVLSQNIFSYITIQFCFKLSKYIF*LDIFL*Q 327
           ++  ++VF+  +  ++H      + FH+ + S  I SY+  QF +        +  ++  
Sbjct: 97  LMKIVAVFTLFLIYILHI---LQQTFHLLLFSLAIMSYLKYQFPYDFLYSQNYISKYVRN 153

Query: 326 SNVFFLLN*FVA*QFIYIYLFSIGAKSNKPLAIF*SFPLEF*LTK*KFPNFLV-YFNI*L 150
            NVFF+L  FV    + ++   +    N+ + I   F L   +    F   L  + NI +
Sbjct: 154 FNVFFVLKDFVCSAILVLHFEKL--LGNELMNITSGFYLVLYIAVNMFICLLTPFINISI 211

Query: 149 LPNIFD*NLMFVSRHIYIFKCLYV 78
           +  +     +   +HIYI K +++
Sbjct: 212 ITGMKKNRHLHSQQHIYIQKYMFI 235


>U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical
           protein F13B9.1c protein.
          Length = 1609

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 633 GADAPTDEQHVERHASLSAPHPHVE 559
           G+  P+ E   ERH + +AP PHVE
Sbjct: 214 GSAPPSKEVTPERHFTAAAPAPHVE 238


>U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical
           protein F13B9.1b protein.
          Length = 1614

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 633 GADAPTDEQHVERHASLSAPHPHVE 559
           G+  P+ E   ERH + +AP PHVE
Sbjct: 214 GSAPPSKEVTPERHFTAAAPAPHVE 238


>U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical
           protein F13B9.1a protein.
          Length = 1632

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 633 GADAPTDEQHVERHASLSAPHPHVE 559
           G+  P+ E   ERH + +AP PHVE
Sbjct: 214 GSAPPSKEVTPERHFTAAAPAPHVE 238


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,142,198
Number of Sequences: 27780
Number of extensions: 383296
Number of successful extensions: 909
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)