Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_J05
         (880 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.8  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   3.7  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   4.9  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   4.9  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -2

Query: 768  VDRTEWAQCWPAARPAPXEDGRA 700
            ++RT W Q  P   P P   G+A
Sbjct: 1345 LERTAWRQQQPPPPPPPPSSGQA 1367


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +3

Query: 33  ILKLLRXKCQAVTDSHVQTFENINVSTYEHQVLVKNIG 146
           +L  L   CQ VTD H +   N     YE + +  + G
Sbjct: 6   LLMYLGITCQGVTDIHSRNLTNSLKVIYEWKYIDYDFG 43


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +3

Query: 549 RRRLQREDVGRSKTRDARRAAHLLGHRHLARSERSLCAATPG 674
           R+R QRE  G  + R  + A H+    ++ +  R +  A+ G
Sbjct: 440 RKRRQREAAGNCRKRGEKIARHINSVSYIDKVARIVFPASFG 481


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = -2

Query: 696 PSGSL--STSQG*LHIETVHSEPGADAPTDEQHVERHASLSAPHPHVEAFFFDETRGYF 526
           P  SL  +TS   L +E   + P     T+ +H   +A  +A  PH  A  FDE   Y+
Sbjct: 740 PRASLVSTTSVKSLRLEGDETPPYGMELTEAEH---YALYTAMAPHATASEFDEMSFYY 795


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,042
Number of Sequences: 438
Number of extensions: 4863
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)