Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_J03
         (901 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    31   0.29 
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch...    30   0.52 
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po...    29   1.2  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    27   2.7  

>SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
 Frame = +1

Query: 310 KKLLEELRA-VLHISHDRHSAEARRVSN--DELLATIAERLSGPNTGLGWICEGRRKVPL 480
           +KLLE++R+  L +     S+  + V    D+LL  +AE  S P +    I E ++K+PL
Sbjct: 128 RKLLEKVRSNELALDDSLLSSSEKEVDEEADKLLEKVAEESSHPESVS--ILEEKKKIPL 185

Query: 481 LPRG 492
            P G
Sbjct: 186 YPNG 189


>SPBC428.08c |clr4||histone H3 methyltransferase
           Clr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 29.9 bits (64), Expect = 0.52
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +1

Query: 604 NK*RRNXKCGRTNCREWTF 660
           +K RR  KCG  NCR W F
Sbjct: 471 SKLRRQCKCGSANCRGWLF 489


>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 619

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 19/80 (23%), Positives = 33/80 (41%)
 Frame = +1

Query: 271 SVFRAQGPLXDHRKKLLEELRAVLHISHDRHSAEARRVSNDELLATIAERLSGPNTGLGW 450
           S+F   GP+      L   +  ++ + H+    E  R+  D+    + E  SG   G   
Sbjct: 27  SIFSVSGPVVVAANMLGCSMYELVRVGHEELVGEVIRIHQDKCTIQVYEETSGLTVGDPV 86

Query: 451 ICEGRRKVPLLPRGIAQTMY 510
              G+     L  G+A+T+Y
Sbjct: 87  QRTGKPLSVELGPGLAETIY 106


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = -1

Query: 691  VVALIHSFI*RKSTLCSLSFHTXNFFFICFRGNKLSSPE 575
            V  ++H+++  ++ L S+ F     FF+CF+   L + E
Sbjct: 1307 VPGILHAWVIIRNRLTSIRFIVNRKFFVCFKDETLPNVE 1345


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,293,640
Number of Sequences: 5004
Number of extensions: 66291
Number of successful extensions: 170
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)