Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_J02
(957 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0966 + 21921343-21921354,21923196-21923264,21924165-21924266 31 1.4
08_02_0655 + 19738334-19739385,19739501-19739745,19740094-19740119 29 5.5
02_04_0516 + 23593088-23593116,23593209-23593336,23593527-235937... 29 5.5
02_04_0103 - 19768288-19768737 29 5.5
02_01_0475 + 3422629-3422695,3422960-3423216 29 5.5
>10_08_0966 + 21921343-21921354,21923196-21923264,21924165-21924266
Length = 60
Score = 31.1 bits (67), Expect = 1.4
Identities = 17/32 (53%), Positives = 17/32 (53%)
Frame = +1
Query: 133 KKKKXKKKKKXXXKKKX*XXXKKXKXXXXXLG 228
KKKK KKKKK KKK KK K LG
Sbjct: 28 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKLLG 59
>08_02_0655 + 19738334-19739385,19739501-19739745,19740094-19740119
Length = 440
Score = 29.1 bits (62), Expect = 5.5
Identities = 15/25 (60%), Positives = 15/25 (60%)
Frame = +1
Query: 133 KKKKXKKKKKXXXKKKX*XXXKKXK 207
KKKK KKKKK KKK KK K
Sbjct: 373 KKKKKKKKKKKKKKKKKKKKKKKKK 397
Score = 29.1 bits (62), Expect = 5.5
Identities = 15/25 (60%), Positives = 15/25 (60%)
Frame = +1
Query: 133 KKKKXKKKKKXXXKKKX*XXXKKXK 207
KKKK KKKKK KKK KK K
Sbjct: 374 KKKKKKKKKKKKKKKKKKKKKKKKK 398
Score = 29.1 bits (62), Expect = 5.5
Identities = 15/25 (60%), Positives = 15/25 (60%)
Frame = +1
Query: 133 KKKKXKKKKKXXXKKKX*XXXKKXK 207
KKKK KKKKK KKK KK K
Sbjct: 375 KKKKKKKKKKKKKKKKKKKKKKKKK 399
>02_04_0516 +
23593088-23593116,23593209-23593336,23593527-23593714,
23593861-23593919,23594997-23595345,23596081-23596333,
23596404-23597476
Length = 692
Score = 29.1 bits (62), Expect = 5.5
Identities = 15/25 (60%), Positives = 15/25 (60%)
Frame = +1
Query: 133 KKKKXKKKKKXXXKKKX*XXXKKXK 207
KKKK KKKKK KKK KK K
Sbjct: 69 KKKKKKKKKKKKKKKKKKKKNKKKK 93
Score = 29.1 bits (62), Expect = 5.5
Identities = 15/25 (60%), Positives = 15/25 (60%)
Frame = +1
Query: 133 KKKKXKKKKKXXXKKKX*XXXKKXK 207
KKKK KKKKK KKK KK K
Sbjct: 70 KKKKKKKKKKKKKKKKKKKNKKKKK 94
Score = 29.1 bits (62), Expect = 5.5
Identities = 15/25 (60%), Positives = 15/25 (60%)
Frame = +1
Query: 133 KKKKXKKKKKXXXKKKX*XXXKKXK 207
KKKK KKKKK KKK KK K
Sbjct: 71 KKKKKKKKKKKKKKKKKKNKKKKKK 95
Score = 29.1 bits (62), Expect = 5.5
Identities = 15/25 (60%), Positives = 15/25 (60%)
Frame = +1
Query: 133 KKKKXKKKKKXXXKKKX*XXXKKXK 207
KKKK KKKKK KKK KK K
Sbjct: 72 KKKKKKKKKKKKKKKKKNKKKKKKK 96
Score = 29.1 bits (62), Expect = 5.5
Identities = 15/25 (60%), Positives = 15/25 (60%)
Frame = +1
Query: 133 KKKKXKKKKKXXXKKKX*XXXKKXK 207
KKKK KKKKK KKK KK K
Sbjct: 73 KKKKKKKKKKKKKKKKNKKKKKKKK 97
Score = 29.1 bits (62), Expect = 5.5
Identities = 15/25 (60%), Positives = 15/25 (60%)
Frame = +1
Query: 133 KKKKXKKKKKXXXKKKX*XXXKKXK 207
KKKK KKKKK KKK KK K
Sbjct: 77 KKKKKKKKKKKKNKKKKKKKKKKKK 101
Score = 29.1 bits (62), Expect = 5.5
Identities = 15/25 (60%), Positives = 15/25 (60%)
Frame = +1
Query: 133 KKKKXKKKKKXXXKKKX*XXXKKXK 207
KKKK KKKKK KKK KK K
Sbjct: 78 KKKKKKKKKKKNKKKKKKKKKKKKK 102
Score = 29.1 bits (62), Expect = 5.5
Identities = 15/25 (60%), Positives = 15/25 (60%)
Frame = +1
Query: 133 KKKKXKKKKKXXXKKKX*XXXKKXK 207
KKKK KKKKK KKK KK K
Sbjct: 79 KKKKKKKKKKNKKKKKKKKKKKKKK 103
>02_04_0103 - 19768288-19768737
Length = 149
Score = 29.1 bits (62), Expect = 5.5
Identities = 15/25 (60%), Positives = 15/25 (60%)
Frame = +1
Query: 133 KKKKXKKKKKXXXKKKX*XXXKKXK 207
KKKK KKKKK KKK KK K
Sbjct: 113 KKKKKKKKKKKKKKKKKKKKKKKKK 137
Score = 29.1 bits (62), Expect = 5.5
Identities = 15/25 (60%), Positives = 15/25 (60%)
Frame = +1
Query: 133 KKKKXKKKKKXXXKKKX*XXXKKXK 207
KKKK KKKKK KKK KK K
Sbjct: 114 KKKKKKKKKKKKKKKKKKKKKKKKK 138
Score = 29.1 bits (62), Expect = 5.5
Identities = 15/25 (60%), Positives = 15/25 (60%)
Frame = +1
Query: 133 KKKKXKKKKKXXXKKKX*XXXKKXK 207
KKKK KKKKK KKK KK K
Sbjct: 115 KKKKKKKKKKKKKKKKKKKKKKKKK 139
>02_01_0475 + 3422629-3422695,3422960-3423216
Length = 107
Score = 29.1 bits (62), Expect = 5.5
Identities = 15/25 (60%), Positives = 15/25 (60%)
Frame = +1
Query: 133 KKKKXKKKKKXXXKKKX*XXXKKXK 207
KKKK KKKKK KKK KK K
Sbjct: 43 KKKKKKKKKKKKKKKKKKKKKKKKK 67
Score = 29.1 bits (62), Expect = 5.5
Identities = 15/25 (60%), Positives = 15/25 (60%)
Frame = +1
Query: 133 KKKKXKKKKKXXXKKKX*XXXKKXK 207
KKKK KKKKK KKK KK K
Sbjct: 44 KKKKKKKKKKKKKKKKKKKKKKKKK 68
Score = 29.1 bits (62), Expect = 5.5
Identities = 15/25 (60%), Positives = 15/25 (60%)
Frame = +1
Query: 133 KKKKXKKKKKXXXKKKX*XXXKKXK 207
KKKK KKKKK KKK KK K
Sbjct: 45 KKKKKKKKKKKKKKKKKKKKKKKKK 69
Score = 29.1 bits (62), Expect = 5.5
Identities = 15/25 (60%), Positives = 15/25 (60%)
Frame = +1
Query: 133 KKKKXKKKKKXXXKKKX*XXXKKXK 207
KKKK KKKKK KKK KK K
Sbjct: 46 KKKKKKKKKKKKKKKKKKKKKKKKK 70
Score = 29.1 bits (62), Expect = 5.5
Identities = 15/25 (60%), Positives = 15/25 (60%)
Frame = +1
Query: 133 KKKKXKKKKKXXXKKKX*XXXKKXK 207
KKKK KKKKK KKK KK K
Sbjct: 47 KKKKKKKKKKKKKKKKKKKKKKKKK 71
Score = 29.1 bits (62), Expect = 5.5
Identities = 15/25 (60%), Positives = 15/25 (60%)
Frame = +1
Query: 133 KKKKXKKKKKXXXKKKX*XXXKKXK 207
KKKK KKKKK KKK KK K
Sbjct: 49 KKKKKKKKKKKKKKKKKKKKKKKNK 73
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,794,094
Number of Sequences: 37544
Number of extensions: 101245
Number of successful extensions: 484
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 330
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2764678640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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