Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_I22
(893 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9VD81 Cluster: DNA-directed RNA polymerase subunit; n=... 122 1e-26
UniRef50_Q9P1U0 Cluster: DNA-directed RNA polymerase I subunit R... 81 5e-14
UniRef50_P32529 Cluster: DNA-directed RNA polymerase I subunit R... 73 1e-11
UniRef50_Q5DGH5 Cluster: SJCHGC08580 protein; n=1; Schistosoma j... 72 2e-11
UniRef50_O17587 Cluster: Putative uncharacterized protein; n=2; ... 72 2e-11
UniRef50_O94703 Cluster: DNA-directed RNA polymerase I subunit R... 67 5e-10
UniRef50_Q54YF5 Cluster: RNA polymerase I subunit; n=1; Dictyost... 66 1e-09
UniRef50_Q4T1I2 Cluster: Chromosome undetermined SCAF10575, whol... 65 2e-09
UniRef50_Q4P4T4 Cluster: Putative uncharacterized protein; n=1; ... 65 2e-09
UniRef50_UPI00006600EC Cluster: DNA-directed RNA polymerase I su... 63 1e-08
UniRef50_A2EHZ7 Cluster: Putative uncharacterized protein; n=1; ... 61 3e-08
UniRef50_A0E7M3 Cluster: Chromosome undetermined scaffold_81, wh... 61 4e-08
UniRef50_Q8SRA1 Cluster: DNA-DIRECTED RNA POLYMERASE I SUBUNIT M... 60 6e-08
UniRef50_UPI000049984E Cluster: DNA-directed RNA polymerase I su... 60 1e-07
UniRef50_Q01C33 Cluster: RNA polymerase III subunit C11; n=2; Os... 59 2e-07
UniRef50_Q22CT1 Cluster: Transcription factor S-II; n=1; Tetrahy... 58 2e-07
UniRef50_Q2UH76 Cluster: Predicted protein; n=1; Aspergillus ory... 57 5e-07
UniRef50_Q0DP65 Cluster: Os03g0711700 protein; n=4; Oryza sativa... 57 7e-07
UniRef50_Q7QY69 Cluster: GLP_572_32225_32536; n=1; Giardia lambl... 57 7e-07
UniRef50_Q9LU97 Cluster: Similarity to transcription-associated ... 56 9e-07
UniRef50_A1CED1 Cluster: DNA-directed RNA polymerase subunit; n=... 55 2e-06
UniRef50_Q5KKH5 Cluster: DNA-directed RNA polymerase subunit; n=... 55 3e-06
UniRef50_A7DQB3 Cluster: Transcription termination factor Tfs; n... 54 5e-06
UniRef50_Q4N7G2 Cluster: Putative uncharacterized protein; n=2; ... 54 6e-06
UniRef50_O96159 Cluster: Transcription factor, putative; n=5; Pl... 54 6e-06
UniRef50_Q9LNT2 Cluster: T20H2.16 protein; n=1; Arabidopsis thal... 53 9e-06
UniRef50_A7ARU9 Cluster: Putative uncharacterized protein; n=1; ... 52 2e-05
UniRef50_Q9LNK0 Cluster: DNA-directed RNA polymerase subunit; n=... 52 3e-05
UniRef50_Q7RCT6 Cluster: Putative transcription factor; n=2; Pla... 51 5e-05
UniRef50_Q5CYY8 Cluster: RNA polymerase III subunit C11; n=1; Cr... 51 5e-05
UniRef50_Q5V5C5 Cluster: DNA-directed RNA-polymerase subunit M; ... 50 6e-05
UniRef50_Q74N12 Cluster: NEQ377; n=1; Nanoarchaeum equitans|Rep:... 50 8e-05
UniRef50_A5KAM3 Cluster: Putative uncharacterized protein; n=4; ... 48 2e-04
UniRef50_A4R9N1 Cluster: Predicted protein; n=1; Magnaporthe gri... 48 3e-04
UniRef50_A1RXU9 Cluster: Transcription termination factor Tfs; n... 48 3e-04
UniRef50_Q4CXN7 Cluster: Transcription elongation factor S-II, p... 48 4e-04
UniRef50_Q5CUJ8 Cluster: Putative uncharacterized protein; n=1; ... 47 6e-04
UniRef50_Q15ES4 Cluster: RNA polymerase III subunit C11-like pro... 47 6e-04
UniRef50_Q8SSB3 Cluster: DNA-DIRECTED RNA POLYMERASE III 12.5kDa... 46 0.001
UniRef50_O27369 Cluster: DNA-directed RNA polymerase subunit M; ... 46 0.001
UniRef50_O13896 Cluster: DNA-directed RNA polymerase III subunit... 46 0.001
UniRef50_Q58548 Cluster: DNA-directed RNA polymerase subunit M; ... 46 0.001
UniRef50_Q0D7N2 Cluster: Os07g0229700 protein; n=4; Magnoliophyt... 46 0.002
UniRef50_A7Q3Y6 Cluster: Chromosome chr13 scaffold_48, whole gen... 46 0.002
UniRef50_Q9YEZ3 Cluster: Archaeal transcription factor S; n=2; T... 46 0.002
UniRef50_Q4A328 Cluster: Transcription factor S-II (TFIIS) famil... 45 0.002
UniRef50_Q8PX24 Cluster: DNA-directed RNA polymerase subunit M; ... 45 0.003
UniRef50_A7D318 Cluster: Transcription factor TFIIS; n=1; Haloru... 45 0.003
UniRef50_Q2NEY4 Cluster: RpoM2; n=2; Methanobacteriaceae|Rep: Rp... 44 0.004
UniRef50_A0RXH6 Cluster: DNA-directed RNA polymerase, subunit M/... 44 0.005
UniRef50_A2EBM6 Cluster: Putative uncharacterized protein; n=1; ... 44 0.007
UniRef50_A7TNI5 Cluster: Putative uncharacterized protein; n=1; ... 44 0.007
UniRef50_Q4DC35 Cluster: DNA-directed RNA polymerase subunit; n=... 43 0.009
UniRef50_Q2U4B9 Cluster: Transcription elongation factor TFIIS/C... 43 0.009
UniRef50_A4S3C9 Cluster: Predicted protein; n=2; Ostreococcus|Re... 43 0.012
UniRef50_Q4DDP9 Cluster: DNA-directed RNA polymerase, putative; ... 43 0.012
UniRef50_Q2P9W0 Cluster: RNA polymerase I subunit RPA12; n=2; Tr... 43 0.012
UniRef50_Q8ZTX9 Cluster: DNA-directed RNA polymerase subunit M; ... 43 0.012
UniRef50_Q9ZVH8 Cluster: Putative elongation factor; n=5; Magnol... 42 0.016
UniRef50_A4RUS3 Cluster: Predicted protein; n=5; Eukaryota|Rep: ... 42 0.016
UniRef50_A3LW94 Cluster: DNA-directed RNA polymerase subunit; n=... 42 0.016
UniRef50_A3DM83 Cluster: Transcription factor S; n=1; Staphyloth... 42 0.021
UniRef50_P07273 Cluster: Transcription elongation factor S-II; n... 42 0.021
UniRef50_P49373 Cluster: Transcription elongation factor S-II; n... 42 0.021
UniRef50_Q07271 Cluster: DNA-directed RNA polymerase subunit M; ... 42 0.021
UniRef50_Q586X9 Cluster: Transcription elongation factor S-II, p... 42 0.028
UniRef50_Q4Q100 Cluster: Transcription factor S-II-like protein;... 42 0.028
UniRef50_Q5KEF1 Cluster: RNA polymerase III smallest subunit, pu... 42 0.028
UniRef50_A4R9M8 Cluster: Putative uncharacterized protein; n=1; ... 42 0.028
UniRef50_P52652 Cluster: Putative transcription elongation facto... 42 0.028
UniRef50_Q387Z6 Cluster: RNA polymerase III C11 subunit, putativ... 41 0.037
UniRef50_A0B7Y7 Cluster: Transcription factor TFIIS; n=1; Methan... 41 0.037
UniRef50_Q4N8B9 Cluster: Transcription elongation factor SII, pu... 41 0.049
UniRef50_Q8SS71 Cluster: TRANSCRIPTION ELONGATION FACTOR SII; n=... 41 0.049
UniRef50_A7F3K8 Cluster: Predicted protein; n=1; Sclerotinia scl... 41 0.049
UniRef50_Q97AQ6 Cluster: Transcription factor [TFIIS/RPB9]; n=5;... 41 0.049
UniRef50_A6QWZ4 Cluster: Predicted protein; n=1; Ajellomyces cap... 40 0.065
UniRef50_Q04307 Cluster: DNA-directed RNA polymerase III subunit... 40 0.065
UniRef50_UPI0000E47C8A Cluster: PREDICTED: similar to ENSANGP000... 40 0.086
UniRef50_Q2H0C1 Cluster: DNA-directed RNA polymerase subunit; n=... 40 0.086
UniRef50_A6RN27 Cluster: Transcription elongation factor S-II; n... 40 0.086
UniRef50_UPI00004998C5 Cluster: RNA polymerase III subunit; n=1;... 40 0.11
UniRef50_A5JZL5 Cluster: Transcription elongation factor, putati... 40 0.11
UniRef50_A3LRC5 Cluster: Predicted protein; n=5; Saccharomycetal... 40 0.11
UniRef50_UPI0000499ED2 Cluster: hypothetical protein 230.t00020;... 39 0.15
UniRef50_A0CQT2 Cluster: Chromosome undetermined scaffold_24, wh... 39 0.15
UniRef50_Q4P1X5 Cluster: Putative uncharacterized protein; n=1; ... 39 0.15
UniRef50_Q4UH96 Cluster: Transcription elongation factor, putati... 39 0.20
UniRef50_Q5YFI0 Cluster: Transcription elongation factor TFIIS; ... 38 0.26
UniRef50_Q4Q3Q4 Cluster: Transcription elongation factor-like pr... 38 0.26
UniRef50_Q6C6I8 Cluster: Similar to DEHA0C15686g Debaryomyces ha... 38 0.26
UniRef50_Q9YPH8 Cluster: Transcription elongation factor SII; n=... 38 0.35
UniRef50_A7AWE5 Cluster: Transcription factor S-II (TFIIS)and tr... 38 0.35
UniRef50_Q0UVI1 Cluster: Predicted protein; n=1; Phaeosphaeria n... 38 0.35
UniRef50_Q2FPF9 Cluster: Transcription factor S; n=3; Euryarchae... 38 0.35
UniRef50_Q9N4B7 Cluster: DNA-directed RNA polymerase subunit; n=... 38 0.46
UniRef50_Q5CVE1 Cluster: Transcription elongation factor TFIIS; ... 38 0.46
UniRef50_Q197A5 Cluster: Putative uncharacterized protein; n=1; ... 37 0.60
UniRef50_A0DS61 Cluster: Chromosome undetermined scaffold_61, wh... 37 0.80
UniRef50_Q9P9I8 Cluster: Archaeal transcription factor S; n=2; M... 37 0.80
UniRef50_Q677Z7 Cluster: DNA-directed RNA polymerase subunit M; ... 36 1.1
UniRef50_Q1JT63 Cluster: Transcription elongation factor s-II, p... 36 1.1
UniRef50_Q5V537 Cluster: DNA-directed RNA-polymerase subunit M; ... 36 1.1
UniRef50_Q0W2J5 Cluster: Archaeal transcription factor S; n=4; E... 36 1.1
UniRef50_Q9Y2Y1 Cluster: DNA-directed RNA polymerase III subunit... 36 1.1
UniRef50_UPI000049A55E Cluster: hypothetical protein 103.t00039;... 36 1.4
UniRef50_Q9DGD2 Cluster: Transcription elongation factor XSII-K1... 36 1.4
UniRef50_Q5UQS8 Cluster: TFII-like transcription factor; n=1; Ac... 36 1.4
UniRef50_P27948 Cluster: Transcription factor S-II-related prote... 36 1.8
UniRef50_Q91FH5 Cluster: 349L; n=1; Invertebrate iridescent viru... 35 2.4
UniRef50_Q3KTM0 Cluster: FRO1-like protein; n=13; Magnoliophyta|... 35 2.4
UniRef50_A7ASV0 Cluster: Transcription factor S-II protein, puta... 35 2.4
UniRef50_A2RAZ1 Cluster: Complex: hRPC11 is a small; n=5; Euroti... 35 2.4
UniRef50_P23193 Cluster: Transcription elongation factor A prote... 35 2.4
UniRef50_Q6GZP4 Cluster: Transcription elongation factor SII; n=... 35 3.2
UniRef50_Q7QXB3 Cluster: GLP_741_50228_49188; n=1; Giardia lambl... 35 3.2
UniRef50_Q4QAW0 Cluster: Transcription elongation factor, putati... 35 3.2
UniRef50_O75764 Cluster: Transcription elongation factor A prote... 35 3.2
UniRef50_UPI0000DB6D42 Cluster: PREDICTED: similar to Phospholip... 34 4.3
UniRef50_Q6P0U5 Cluster: Zgc:77732; n=4; Clupeocephala|Rep: Zgc:... 34 4.3
UniRef50_Q4TIF2 Cluster: Chromosome undetermined SCAF2195, whole... 34 4.3
UniRef50_Q919I9 Cluster: CUN088 putative lef-5 late expression f... 34 5.6
UniRef50_Q54YG9 Cluster: RNA polymerase II elongation factor; n=... 34 5.6
UniRef50_Q4QDI8 Cluster: Putative uncharacterized protein; n=7; ... 34 5.6
UniRef50_Q4QDH9 Cluster: RNA polymerase III C11 subunit, putativ... 34 5.6
UniRef50_Q15560 Cluster: Transcription elongation factor A prote... 34 5.6
UniRef50_Q6EU09 Cluster: DNA-directed RNA polymerase subunit; n=... 33 7.4
UniRef50_Q9GZ09 Cluster: Transcription elongation factor TFIIS; ... 33 7.4
UniRef50_Q7QQW3 Cluster: DNA-directed RNA polymerase subunit; n=... 33 7.4
UniRef50_Q5CPB7 Cluster: DNA-directed RNA polymerase 2 subunit; ... 33 7.4
UniRef50_Q4X1W6 Cluster: DNA-directed RNA polymerase subunit; n=... 33 7.4
UniRef50_UPI0000161EFD Cluster: Transcription factor SII homolog... 33 9.8
UniRef50_Q22UN1 Cluster: Putative uncharacterized protein; n=1; ... 33 9.8
>UniRef50_Q9VD81 Cluster: DNA-directed RNA polymerase subunit; n=8;
Endopterygota|Rep: DNA-directed RNA polymerase subunit -
Drosophila melanogaster (Fruit fly)
Length = 120
Score = 122 bits (294), Expect = 1e-26
Identities = 59/111 (53%), Positives = 75/111 (67%), Gaps = 3/111 (2%)
Frame = +1
Query: 142 FVLAVGPYYPCYKSLAPVKCYTCKAHYEADNYSKMKFQYTIHFNTI--SVITNENILHTD 315
F + G P + V CY CK ++ D YS K ++TIHFNT S + N ++
Sbjct: 10 FCPSCGSILPELQVKGNVICYNCKKEFQPDVYSGEKSEFTIHFNTYDPSKVFNRTKRESE 69
Query: 316 GP-EGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETENS 465
+GPVVERKC KC +D+MSYATLQLRSADEGQTVF+TC+KCK+KE+ENS
Sbjct: 70 SDADGPVVERKCPKCNHDKMSYATLQLRSADEGQTVFFTCLKCKFKESENS 120
>UniRef50_Q9P1U0 Cluster: DNA-directed RNA polymerase I subunit
RPA12; n=22; Eumetazoa|Rep: DNA-directed RNA polymerase
I subunit RPA12 - Homo sapiens (Human)
Length = 126
Score = 80.6 bits (190), Expect = 5e-14
Identities = 37/93 (39%), Positives = 58/93 (62%), Gaps = 2/93 (2%)
Frame = +1
Query: 193 VKCYTCKAHYEADNYSKMKFQYTIHFNTISVITNENILHTDGPE--GPVVERKCAKCGYD 366
V C C + ++ + ++ F+ + ++ +GPE GPVV+R+C +CG++
Sbjct: 36 VTCIRCGFNINVRDFEGKVVKTSVVFHQLGTAMPMSV--EEGPECQGPVVDRRCPRCGHE 93
Query: 367 RMSYATLQLRSADEGQTVFYTCIKCKYKETENS 465
M+Y T Q+RSADEGQTVFYTC CK++E E+S
Sbjct: 94 GMAYHTRQMRSADEGQTVFYTCTNCKFQEKEDS 126
>UniRef50_P32529 Cluster: DNA-directed RNA polymerase I subunit
RPA12; n=12; Saccharomycetales|Rep: DNA-directed RNA
polymerase I subunit RPA12 - Saccharomyces cerevisiae
(Baker's yeast)
Length = 125
Score = 72.9 bits (171), Expect = 1e-11
Identities = 38/98 (38%), Positives = 55/98 (56%), Gaps = 7/98 (7%)
Frame = +1
Query: 193 VKCYTCKAHYEADNYSKMKFQYTIHFNTI--SVITNENILHT-----DGPEGPVVERKCA 351
V+C CKA Y +S +K T + S+ ++++ T + +G ++ KC
Sbjct: 28 VECSQCKAIYPKSQFSNLKVVTTTADDAFPSSLRAKKSVVKTSLKKNELKDGATIKEKCP 87
Query: 352 KCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETENS 465
+CG + M+Y TLQLRSADEG TVFYTC C YK N+
Sbjct: 88 QCGNEEMNYHTLQLRSADEGATVFYTCTSCGYKFRTNN 125
>UniRef50_Q5DGH5 Cluster: SJCHGC08580 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC08580 protein - Schistosoma
japonicum (Blood fluke)
Length = 116
Score = 72.1 bits (169), Expect = 2e-11
Identities = 30/48 (62%), Positives = 36/48 (75%)
Frame = +1
Query: 322 EGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETENS 465
+GP + ++CA CG DRM Y TLQ RSADEGQTV YTC +C KE EN+
Sbjct: 69 DGPSIRKECAYCGNDRMVYVTLQTRSADEGQTVIYTCTQCAKKEIENT 116
>UniRef50_O17587 Cluster: Putative uncharacterized protein; n=2;
Caenorhabditis|Rep: Putative uncharacterized protein -
Caenorhabditis elegans
Length = 119
Score = 71.7 bits (168), Expect = 2e-11
Identities = 34/68 (50%), Positives = 43/68 (63%), Gaps = 5/68 (7%)
Frame = +1
Query: 277 ISVITNENILHTDGPEGP-----VVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 441
+ I + TDG E VV+ C KCG+ + SY+T+Q RSADEGQTVFYTC+KC
Sbjct: 52 VEKIYERTVADTDGIENDESADAVVDHICTKCGHSKASYSTMQTRSADEGQTVFYTCLKC 111
Query: 442 KYKETENS 465
K K+ E S
Sbjct: 112 KKKDIEYS 119
>UniRef50_O94703 Cluster: DNA-directed RNA polymerase I subunit
RPA12; n=1; Schizosaccharomyces pombe|Rep: DNA-directed
RNA polymerase I subunit RPA12 - Schizosaccharomyces
pombe (Fission yeast)
Length = 119
Score = 67.3 bits (157), Expect = 5e-10
Identities = 28/48 (58%), Positives = 34/48 (70%)
Frame = +1
Query: 322 EGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETENS 465
E +E KC KCG D M++ TLQLRSADEG TVFY C +C YK + N+
Sbjct: 72 EAATIEEKCPKCGNDHMTFHTLQLRSADEGSTVFYECPRCAYKFSTNN 119
>UniRef50_Q54YF5 Cluster: RNA polymerase I subunit; n=1;
Dictyostelium discoideum AX4|Rep: RNA polymerase I
subunit - Dictyostelium discoideum AX4
Length = 324
Score = 66.1 bits (154), Expect = 1e-09
Identities = 24/47 (51%), Positives = 35/47 (74%)
Frame = +1
Query: 325 GPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETENS 465
G +++ KC +CG+ +M + T Q RSADEGQT+FY C+KC +K + NS
Sbjct: 278 GAIIDEKCPECGHGKMYFKTAQTRSADEGQTIFYDCVKCSFKFSTNS 324
>UniRef50_Q4T1I2 Cluster: Chromosome undetermined SCAF10575, whole
genome shotgun sequence; n=2; Tetraodon
nigroviridis|Rep: Chromosome undetermined SCAF10575,
whole genome shotgun sequence - Tetraodon nigroviridis
(Green puffer)
Length = 147
Score = 65.3 bits (152), Expect = 2e-09
Identities = 29/90 (32%), Positives = 46/90 (51%)
Frame = +1
Query: 193 VKCYTCKAHYEADNYSKMKFQYTIHFNTISVITNENILHTDGPEGPVVERKCAKCGYDRM 372
V+C C + + + T+ N +GPV++R+C +C + M
Sbjct: 39 VRCPRCSFSIPVAEFDGQQIRSTVVLNPAEKSAAVVEEEDSDLQGPVIDRRCVRCNKEGM 98
Query: 373 SYATLQLRSADEGQTVFYTCIKCKYKETEN 462
Y T Q+RSADEGQTVF+TC+ C+ + E+
Sbjct: 99 VYHTRQMRSADEGQTVFFTCVHCRRRTLES 128
>UniRef50_Q4P4T4 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 147
Score = 65.3 bits (152), Expect = 2e-09
Identities = 27/49 (55%), Positives = 35/49 (71%)
Frame = +1
Query: 319 PEGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETENS 465
P+ ++ KC CG D M++ TLQLRSADEG TVFY C KC YK ++N+
Sbjct: 99 PQEATIKEKCPGCGNDEMNFHTLQLRSADEGTTVFYDCPKCGYKFSQNN 147
>UniRef50_UPI00006600EC Cluster: DNA-directed RNA polymerase I
subunit 12 (EC 2.7.7.6) (Nuclear RNA polymerase I
small-specific subunit Rpa12) (Zinc ribbon domain-
containing protein 1).; n=1; Takifugu rubripes|Rep:
DNA-directed RNA polymerase I subunit 12 (EC 2.7.7.6)
(Nuclear RNA polymerase I small-specific subunit Rpa12)
(Zinc ribbon domain- containing protein 1). - Takifugu
rubripes
Length = 140
Score = 62.9 bits (146), Expect = 1e-08
Identities = 24/44 (54%), Positives = 35/44 (79%)
Frame = +1
Query: 334 VERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETENS 465
++R+C +C + M Y T Q+RSADEGQTVF+TCI C+++E E+S
Sbjct: 97 IDRRCLRCNKEGMVYHTRQMRSADEGQTVFFTCIHCRFQEKEDS 140
>UniRef50_A2EHZ7 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 126
Score = 61.3 bits (142), Expect = 3e-08
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Frame = +1
Query: 274 TISVITN-ENILHTDGPEGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYK 450
T+ ++ + I G +++ KC +CG + + + T Q+RSADEGQT+FY CI C Y+
Sbjct: 62 TVKIVKEADEITSKQGLARSIIKEKCPECGEEGLYFTTAQIRSADEGQTIFYECIHCGYR 121
Query: 451 ETENS 465
++N+
Sbjct: 122 FSQNA 126
>UniRef50_A0E7M3 Cluster: Chromosome undetermined scaffold_81, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_81,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 118
Score = 60.9 bits (141), Expect = 4e-08
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Frame = +1
Query: 193 VKCYTCKAHYEADNYSKMKFQYTIHFNTISVITNE--NILHTDGPEGPVVERKCAKCGYD 366
++C C +Y TI S ++N+ +D V+E+ C KC ++
Sbjct: 26 IECNRCGYKCSITDYQPKYIISTIKMEPKSWLSNQPQESKLSDQSHRAVIEQVCPKCSHE 85
Query: 367 RMSYATLQLRSADEGQTVFYTCIKCKYKETENS 465
++T QLRSADEG TVFY C+KC+++ N+
Sbjct: 86 EAYFSTAQLRSADEGSTVFYECVKCQFRYQLNN 118
>UniRef50_Q8SRA1 Cluster: DNA-DIRECTED RNA POLYMERASE I SUBUNIT M;
n=1; Encephalitozoon cuniculi|Rep: DNA-DIRECTED RNA
POLYMERASE I SUBUNIT M - Encephalitozoon cuniculi
Length = 99
Score = 60.5 bits (140), Expect = 6e-08
Identities = 34/95 (35%), Positives = 48/95 (50%), Gaps = 4/95 (4%)
Frame = +1
Query: 193 VKCYTCKAHYEA----DNYSKMKFQYTIHFNTISVITNENILHTDGPEGPVVERKCAKCG 360
V+C CK Y+++K Q +H + V +G ++ +C CG
Sbjct: 18 VECPRCKRENSVAMIKPTYTEVKVQRDLHIEAVDV------------QGAKIKHRCPACG 65
Query: 361 YDRMSYATLQLRSADEGQTVFYTCIKCKYKETENS 465
+ M Y T QLRS DEGQTVFY+C KC Y++T S
Sbjct: 66 AEEMMYNTAQLRSTDEGQTVFYSC-KCGYRQTVQS 99
>UniRef50_UPI000049984E Cluster: DNA-directed RNA polymerase I
subunit; n=1; Entamoeba histolytica HM-1:IMSS|Rep:
DNA-directed RNA polymerase I subunit - Entamoeba
histolytica HM-1:IMSS
Length = 122
Score = 59.7 bits (138), Expect = 1e-07
Identities = 24/49 (48%), Positives = 32/49 (65%)
Frame = +1
Query: 319 PEGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETENS 465
P G +V KC CG + M Y + Q+RS DEGQTV+Y C C ++ET N+
Sbjct: 74 PTGAIVYEKCPNCGNETMHYHSAQVRSVDEGQTVYYECPNCGHQETVNT 122
>UniRef50_Q01C33 Cluster: RNA polymerase III subunit C11; n=2;
Ostreococcus|Rep: RNA polymerase III subunit C11 -
Ostreococcus tauri
Length = 136
Score = 58.8 bits (136), Expect = 2e-07
Identities = 24/48 (50%), Positives = 34/48 (70%)
Frame = +1
Query: 322 EGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETENS 465
E V+ KC KC + +++ T+QLRSADEGQTVFY C KC + ++N+
Sbjct: 89 ERATVDEKCPKCKHKGLNFYTMQLRSADEGQTVFYECPKCNHTFSQNN 136
>UniRef50_Q22CT1 Cluster: Transcription factor S-II; n=1;
Tetrahymena thermophila SB210|Rep: Transcription factor
S-II - Tetrahymena thermophila SB210
Length = 136
Score = 58.4 bits (135), Expect = 2e-07
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Frame = +1
Query: 181 SLAPVKCYTCKAHYEADNYSKMKFQYTIHFNT-ISVITNENILHTDGPEGPVVERKCAKC 357
S+ KC + E + + QY N I I E++ + ++++C C
Sbjct: 41 SVLEYKCAPIVSRIEFNQKKQWLEQYRASQNKKIHGIEEEDLEDKHKHKKATLKQECPDC 100
Query: 358 GYDRMSYATLQLRSADEGQTVFYTCIKCKYKETENS 465
G+D + + T+Q RSADEG TVFY C CK+K T N+
Sbjct: 101 GHDTLYFWTVQTRSADEGSTVFYECQDCKFKFTANN 136
>UniRef50_Q2UH76 Cluster: Predicted protein; n=1; Aspergillus
oryzae|Rep: Predicted protein - Aspergillus oryzae
Length = 122
Score = 57.2 bits (132), Expect = 5e-07
Identities = 23/45 (51%), Positives = 32/45 (71%)
Frame = +1
Query: 316 GPEGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYK 450
GP GP +E C KC ++Y+ +QLRSADEG T+FY C+KC ++
Sbjct: 79 GP-GPTIEVDCVKCPSKDVTYSQVQLRSADEGSTIFYNCLKCGHR 122
>UniRef50_Q0DP65 Cluster: Os03g0711700 protein; n=4; Oryza
sativa|Rep: Os03g0711700 protein - Oryza sativa subsp.
japonica (Rice)
Length = 156
Score = 56.8 bits (131), Expect = 7e-07
Identities = 24/47 (51%), Positives = 30/47 (63%)
Frame = +1
Query: 322 EGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETEN 462
E V ++C KC + Y T QLRSADEGQTVFY C C+++ EN
Sbjct: 109 ERATVNKECEKCKNPELQYYTKQLRSADEGQTVFYKCANCRHEFNEN 155
>UniRef50_Q7QY69 Cluster: GLP_572_32225_32536; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_572_32225_32536 - Giardia lamblia
ATCC 50803
Length = 103
Score = 56.8 bits (131), Expect = 7e-07
Identities = 21/46 (45%), Positives = 32/46 (69%)
Frame = +1
Query: 328 PVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETENS 465
PV++ C KC + + YA++Q+RSADEGQT+F+ C C +K N+
Sbjct: 58 PVIDETCPKCHHGQAYYASMQMRSADEGQTIFFECCSCGHKYRTNT 103
>UniRef50_Q9LU97 Cluster: Similarity to transcription-associated
zinc ribbon protein; n=2; Arabidopsis thaliana|Rep:
Similarity to transcription-associated zinc ribbon
protein - Arabidopsis thaliana (Mouse-ear cress)
Length = 119
Score = 56.4 bits (130), Expect = 9e-07
Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 3/97 (3%)
Frame = +1
Query: 178 KSLAPVKCYTCKAHYEADNYSKMKFQYTIHFNTISVITNENIL--HTDGP-EGPVVERKC 348
KS +C CK A + + YT+ I ++ T E P +++ C
Sbjct: 22 KSTKYAECPHCKTTRNAKDIIDKEIAYTVSAEDIRRELGISLFGEKTQAEAELPKIKKAC 81
Query: 349 AKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETE 459
KC + + Y T Q RSADEGQT +YTC C ++ TE
Sbjct: 82 EKCQHPELVYTTRQTRSADEGQTTYYTCPNCAHRFTE 118
>UniRef50_A1CED1 Cluster: DNA-directed RNA polymerase subunit; n=7;
Pezizomycotina|Rep: DNA-directed RNA polymerase subunit
- Aspergillus clavatus
Length = 147
Score = 55.2 bits (127), Expect = 2e-06
Identities = 23/40 (57%), Positives = 29/40 (72%)
Frame = +1
Query: 331 VVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYK 450
+ + CA+CG M + T+QLRSADEG TVFYTC+ C YK
Sbjct: 78 LTQHTCARCGRKEMYFTTVQLRSADEGSTVFYTCV-CGYK 116
>UniRef50_Q5KKH5 Cluster: DNA-directed RNA polymerase subunit; n=1;
Filobasidiella neoformans|Rep: DNA-directed RNA
polymerase subunit - Cryptococcus neoformans
(Filobasidiella neoformans)
Length = 132
Score = 54.8 bits (126), Expect = 3e-06
Identities = 21/43 (48%), Positives = 30/43 (69%)
Frame = +1
Query: 337 ERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETENS 465
+ KC KCG+ +SY +QLRSADEG T+FY C+ C + + N+
Sbjct: 90 QEKCQKCGHIGLSYKEMQLRSADEGSTIFYKCLNCGDQTSTNN 132
>UniRef50_A7DQB3 Cluster: Transcription termination factor Tfs; n=1;
Candidatus Nitrosopumilus maritimus SCM1|Rep:
Transcription termination factor Tfs - Candidatus
Nitrosopumilus maritimus SCM1
Length = 105
Score = 54.0 bits (124), Expect = 5e-06
Identities = 26/55 (47%), Positives = 34/55 (61%), Gaps = 4/55 (7%)
Frame = +1
Query: 295 ENILHTDGPEG----PVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKY 447
E+IL +G EG P ++ +C KCG+D + LQ RSADE T FY C KC+Y
Sbjct: 45 ESILAFEGNEGEESHPTIKIECEKCGHDEAIWWMLQTRSADEPTTQFYRCTKCQY 99
>UniRef50_Q4N7G2 Cluster: Putative uncharacterized protein; n=2;
Theileria|Rep: Putative uncharacterized protein -
Theileria parva
Length = 252
Score = 53.6 bits (123), Expect = 6e-06
Identities = 21/37 (56%), Positives = 26/37 (70%)
Frame = +1
Query: 334 VERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCK 444
V+ C KCG+D Y+T Q RSADEG ++ Y CIKCK
Sbjct: 209 VKYNCEKCGHDTHLYSTFQARSADEGMSIMYECIKCK 245
>UniRef50_O96159 Cluster: Transcription factor, putative; n=5;
Plasmodium|Rep: Transcription factor, putative -
Plasmodium falciparum (isolate 3D7)
Length = 106
Score = 53.6 bits (123), Expect = 6e-06
Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Frame = +1
Query: 199 CYTCKAHYEADN--YSKM---KFQYTIHFNTISVITNENILHTDGPEGPVVERKCAKCGY 363
C +C Y+ N Y+K +F TI + + I N+N+ T + C KC
Sbjct: 24 CKSCNYKYKIKNKIYNKFDCQQFNKTIPLDAVD-INNKNMSKT--------QAVCPKCTN 74
Query: 364 DRMSYATLQLRSADEGQTVFYTCIKCKY 447
D + TLQ+RSADE T+FY C+KC Y
Sbjct: 75 DEAYFYTLQIRSADEPSTIFYICVKCNY 102
>UniRef50_Q9LNT2 Cluster: T20H2.16 protein; n=1; Arabidopsis
thaliana|Rep: T20H2.16 protein - Arabidopsis thaliana
(Mouse-ear cress)
Length = 122
Score = 53.2 bits (122), Expect = 9e-06
Identities = 24/58 (41%), Positives = 36/58 (62%)
Frame = +1
Query: 286 ITNENILHTDGPEGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETE 459
I ++N+ +T E +++ C KC + + Y T Q RSADEGQT +YTC C ++ TE
Sbjct: 67 IIDKNLAYTVTTE---IKKACEKCQHPELVYTTRQTRSADEGQTTYYTCPNCGHRFTE 121
>UniRef50_A7ARU9 Cluster: Putative uncharacterized protein; n=1;
Babesia bovis|Rep: Putative uncharacterized protein -
Babesia bovis
Length = 256
Score = 52.4 bits (120), Expect = 2e-05
Identities = 21/45 (46%), Positives = 29/45 (64%)
Frame = +1
Query: 331 VVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETENS 465
VV++ C CG++ Y+T Q RSADEG TV Y C +CK + N+
Sbjct: 212 VVKQLCDNCGFEEAYYSTFQARSADEGMTVMYECKRCKNRTVVNT 256
>UniRef50_Q9LNK0 Cluster: DNA-directed RNA polymerase subunit; n=3;
Arabidopsis thaliana|Rep: DNA-directed RNA polymerase
subunit - Arabidopsis thaliana (Mouse-ear cress)
Length = 106
Score = 51.6 bits (118), Expect = 3e-05
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Frame = +1
Query: 199 CYTCK-AHYEADNYSKMKFQYTIHFNTISVITNENILHTDGPEGPVVERKCAKCGYDRMS 375
C TC Y K Q + + +V+T ++I P E C +CG+D+
Sbjct: 23 CSTCPYVAYIQRQVEIKKKQLLVKKSIEAVVTKDDI-----PTAAETEAPCPRCGHDKAY 77
Query: 376 YATLQLRSADEGQTVFYTCIKCKY 447
+ ++Q+RSADE ++ FY C+KC++
Sbjct: 78 FKSMQIRSADEPESRFYRCLKCEF 101
>UniRef50_Q7RCT6 Cluster: Putative transcription factor; n=2;
Plasmodium (Vinckeia)|Rep: Putative transcription factor
- Plasmodium yoelii yoelii
Length = 383
Score = 50.8 bits (116), Expect = 5e-05
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Frame = +1
Query: 193 VKCYTCKAHYEADNYSKMKFQYTIHFNTISVITNENILHTDGPEGP--VVERKCAKCGYD 366
++ ++ + Y DN K +Q N I+ L +G G + KC C +D
Sbjct: 296 IELHSYREKYLFDNNKKTYWQ-----NKIATFDKNVELFKEGENGAYNITYEKCTDCDHD 350
Query: 367 RMSYATLQLRSADEGQTVFYTCIKCKYKETENS 465
+ + +Q RSADEG T+ Y C CK + T N+
Sbjct: 351 FLYFVNIQTRSADEGSTIIYYCPNCKKQTTVNN 383
>UniRef50_Q5CYY8 Cluster: RNA polymerase III subunit C11; n=1;
Cryptosporidium parvum Iowa II|Rep: RNA polymerase III
subunit C11 - Cryptosporidium parvum Iowa II
Length = 62
Score = 50.8 bits (116), Expect = 5e-05
Identities = 20/39 (51%), Positives = 25/39 (64%)
Frame = +1
Query: 346 CAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETEN 462
C KC + + LQ+RSADE T FYTC+KC +K EN
Sbjct: 24 CPKCSFSEAYFFQLQIRSADEPMTSFYTCVKCDFKWKEN 62
>UniRef50_Q5V5C5 Cluster: DNA-directed RNA-polymerase subunit M;
n=4; Halobacteriaceae|Rep: DNA-directed RNA-polymerase
subunit M - Haloarcula marismortui (Halobacterium
marismortui)
Length = 108
Score = 50.4 bits (115), Expect = 6e-05
Identities = 19/46 (41%), Positives = 30/46 (65%)
Frame = +1
Query: 325 GPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETEN 462
GP +C +CG +R Y Q+R+ADE +T F+TC +C++K E+
Sbjct: 61 GPTTGARCPECGNERAFYEMKQIRAADESETRFFTCTECEHKWRED 106
>UniRef50_Q74N12 Cluster: NEQ377; n=1; Nanoarchaeum equitans|Rep:
NEQ377 - Nanoarchaeum equitans
Length = 106
Score = 50.0 bits (114), Expect = 8e-05
Identities = 18/35 (51%), Positives = 25/35 (71%)
Frame = +1
Query: 343 KCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKY 447
KC KC + + Y TLQ R++DE +T+FY C+KC Y
Sbjct: 66 KCPKCSSEEVVYFTLQTRASDEAETIFYKCLKCGY 100
>UniRef50_A5KAM3 Cluster: Putative uncharacterized protein; n=4;
Plasmodium|Rep: Putative uncharacterized protein -
Plasmodium vivax
Length = 454
Score = 48.4 bits (110), Expect = 2e-04
Identities = 19/45 (42%), Positives = 26/45 (57%)
Frame = +1
Query: 331 VVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETENS 465
+ KC CG D + + +Q RSADEG T+ Y C CK + T N+
Sbjct: 410 ITYEKCTDCGNDFLHFINIQTRSADEGSTIIYFCPNCKKQTTVNN 454
>UniRef50_A4R9N1 Cluster: Predicted protein; n=1; Magnaporthe
grisea|Rep: Predicted protein - Magnaporthe grisea (Rice
blast fungus) (Pyricularia grisea)
Length = 115
Score = 48.0 bits (109), Expect = 3e-04
Identities = 21/46 (45%), Positives = 25/46 (54%)
Frame = +1
Query: 328 PVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETENS 465
P ++ C C + Y TLQ R ADEG TVFY C C K EN+
Sbjct: 70 PSIDENCRFCPSKTVRYTTLQTRGADEGSTVFYFCEGCSQKWKENN 115
>UniRef50_A1RXU9 Cluster: Transcription termination factor Tfs; n=1;
Thermofilum pendens Hrk 5|Rep: Transcription termination
factor Tfs - Thermofilum pendens (strain Hrk 5)
Length = 109
Score = 48.0 bits (109), Expect = 3e-04
Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Frame = +1
Query: 193 VKCYTCKAHYEADNYSKMKFQYTIHFNTISVITNENILHTDGPEGPVVERKCAKCGYDRM 372
++C C E N + + I V+T ++ D PVV KC CG D+
Sbjct: 22 LRCSRCGYIVEKSNPGTYRVSHRIERTPKDVVT---LVDVDVSVLPVVSFKCENCGNDKA 78
Query: 373 SYATLQLRSADEGQTVFYTCIKCK--YKE 453
LQ R+ DE T FY C KC+ Y+E
Sbjct: 79 YVYELQTRAGDEPATRFYICTKCRKVYRE 107
>UniRef50_Q4CXN7 Cluster: Transcription elongation factor S-II,
putative; n=2; Trypanosoma cruzi|Rep: Transcription
elongation factor S-II, putative - Trypanosoma cruzi
Length = 477
Score = 47.6 bits (108), Expect = 4e-04
Identities = 20/35 (57%), Positives = 23/35 (65%)
Frame = +1
Query: 343 KCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKY 447
KC CG +R SY Q RSADE T F TC++CKY
Sbjct: 438 KCPNCGKNRCSYYEQQTRSADEPTTKFVTCLECKY 472
>UniRef50_Q5CUJ8 Cluster: Putative uncharacterized protein; n=1;
Cryptosporidium parvum Iowa II|Rep: Putative
uncharacterized protein - Cryptosporidium parvum Iowa II
Length = 203
Score = 47.2 bits (107), Expect = 6e-04
Identities = 17/48 (35%), Positives = 28/48 (58%)
Frame = +1
Query: 322 EGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETENS 465
+ P ++ C +C ++ + Q RSADEG TV Y C KC+++ N+
Sbjct: 156 KAPKIQEICPECSHNEAFFTQFQARSADEGTTVMYECCKCQHRRVINN 203
>UniRef50_Q15ES4 Cluster: RNA polymerase III subunit C11-like
protein; n=2; Schistosoma|Rep: RNA polymerase III
subunit C11-like protein - Schistosoma mansoni (Blood
fluke)
Length = 115
Score = 47.2 bits (107), Expect = 6e-04
Identities = 19/41 (46%), Positives = 26/41 (63%)
Frame = +1
Query: 337 ERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETE 459
+ KC KC + R + +Q RSADE T+ Y+CIKC + TE
Sbjct: 74 DEKCPKCSHTRAYFVQMQTRSADEPSTIKYSCIKCHHIWTE 114
>UniRef50_Q8SSB3 Cluster: DNA-DIRECTED RNA POLYMERASE III 12.5kDa
SUBUNIT; n=1; Encephalitozoon cuniculi|Rep: DNA-DIRECTED
RNA POLYMERASE III 12.5kDa SUBUNIT - Encephalitozoon
cuniculi
Length = 104
Score = 46.4 bits (105), Expect = 0.001
Identities = 20/37 (54%), Positives = 25/37 (67%), Gaps = 3/37 (8%)
Frame = +1
Query: 343 KCAK---CGYDRMSYATLQLRSADEGQTVFYTCIKCK 444
KC K CG + +S+ LQ RSADE T+FY CI+CK
Sbjct: 63 KCGKRCECGSEEVSFVELQTRSADEPMTIFYKCIRCK 99
>UniRef50_O27369 Cluster: DNA-directed RNA polymerase subunit M;
n=6; Euryarchaeota|Rep: DNA-directed RNA polymerase
subunit M - Methanobacterium thermoautotrophicum
Length = 104
Score = 46.4 bits (105), Expect = 0.001
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Frame = +1
Query: 202 YTCKAHYEADNYSKMKFQYTIHFNTISVITNENILHT--DGPEGPVVERKCAKCGYDRMS 375
+ C+ YE D K+K +Y + + V E I+ T D P +C KCG
Sbjct: 18 FKCQCGYEKDITDKLKDKYRV---SEEVEAKETIIFTGDDVNTLPTTRVECPKCGNMEAF 74
Query: 376 YATLQLRSADEGQTVFYTCIKCKY 447
+ Q R ADE +T F+ C +CK+
Sbjct: 75 WWLQQTRRADESETRFFRCTRCKH 98
>UniRef50_O13896 Cluster: DNA-directed RNA polymerase III subunit
RPC10; n=1; Schizosaccharomyces pombe|Rep: DNA-directed
RNA polymerase III subunit RPC10 - Schizosaccharomyces
pombe (Fission yeast)
Length = 109
Score = 46.4 bits (105), Expect = 0.001
Identities = 25/88 (28%), Positives = 39/88 (44%)
Frame = +1
Query: 199 CYTCKAHYEADNYSKMKFQYTIHFNTISVITNENILHTDGPEGPVVERKCAKCGYDRMSY 378
C TC H+ + + ++ V+ E ++ E KC +R +
Sbjct: 25 CRTCPYHFPISTFLYSRHEFA-QKEVDDVLGGEEAFESNQQTEVTCEN--TKCDNNRAYF 81
Query: 379 ATLQLRSADEGQTVFYTCIKCKYKETEN 462
LQ+RSADE + FY C KCK++ EN
Sbjct: 82 FQLQIRSADEPMSTFYRCTKCKFQWREN 109
>UniRef50_Q58548 Cluster: DNA-directed RNA polymerase subunit M;
n=9; Euryarchaeota|Rep: DNA-directed RNA polymerase
subunit M - Methanococcus jannaschii
Length = 108
Score = 46.0 bits (104), Expect = 0.001
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Frame = +1
Query: 193 VKCYTCKAHYEADNYSKMKFQYTIHF-NTISVITNENILHTDGPEG-PVVERKCAKCGYD 366
+KC C E +++Y H N IT ++ ++G E P +C KCG++
Sbjct: 19 LKCAVCGYEEETTAEGSKEYEYKEHLENKKEKIT---VIESEGLETLPTTRIECPKCGHN 75
Query: 367 RMSYATLQLRSADEGQTVFYTCIKC 441
+ Q R ADE +T FY C KC
Sbjct: 76 EAYWWLQQTRCADEPETRFYKCKKC 100
>UniRef50_Q0D7N2 Cluster: Os07g0229700 protein; n=4;
Magnoliophyta|Rep: Os07g0229700 protein - Oryza sativa
subsp. japonica (Rice)
Length = 379
Score = 45.6 bits (103), Expect = 0.002
Identities = 18/41 (43%), Positives = 24/41 (58%)
Frame = +1
Query: 319 PEGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 441
P+ + KC +CG + +Y LQ RSADE T F TC+ C
Sbjct: 332 PKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNC 372
>UniRef50_A7Q3Y6 Cluster: Chromosome chr13 scaffold_48, whole genome
shotgun sequence; n=2; Vitis vinifera|Rep: Chromosome
chr13 scaffold_48, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 309
Score = 45.6 bits (103), Expect = 0.002
Identities = 18/41 (43%), Positives = 24/41 (58%)
Frame = +1
Query: 319 PEGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 441
P+ + KC +CG + +Y LQ RSADE T F TC+ C
Sbjct: 262 PKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNC 302
>UniRef50_Q9YEZ3 Cluster: Archaeal transcription factor S; n=2;
Thermoprotei|Rep: Archaeal transcription factor S -
Aeropyrum pernix
Length = 118
Score = 45.6 bits (103), Expect = 0.002
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Frame = +1
Query: 199 CYTCKAHYEA--DNYSKMKFQYTIHF---NTISVITNENILHTDGPEGPVVERKCAKCGY 363
C +C EA +++ + + T+ + I VI +E + +G V C KCG+
Sbjct: 28 CKSCGYSEEASREDHQAYRMRVTVEKGPRDKIVVIDDETPVGAQVLKGSVT---CPKCGH 84
Query: 364 DRMSYATLQLRSADEGQTVFYTCIKCKY 447
D + + +Q RSADE T FY C +C+Y
Sbjct: 85 DEVYFWMMQTRSADEPMTRFYRCKRCRY 112
>UniRef50_Q4A328 Cluster: Transcription factor S-II (TFIIS) family
protein; n=1; Emiliania huxleyi virus 86|Rep:
Transcription factor S-II (TFIIS) family protein -
Emiliania huxleyi virus 86
Length = 150
Score = 45.2 bits (102), Expect = 0.002
Identities = 18/35 (51%), Positives = 22/35 (62%)
Frame = +1
Query: 346 CAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYK 450
C KCG + A Q RSADEG T+F+ C+KC K
Sbjct: 112 CNKCGSSEILMAMAQTRSADEGTTMFFRCVKCNQK 146
>UniRef50_Q8PX24 Cluster: DNA-directed RNA polymerase subunit M;
n=3; Euryarchaeota|Rep: DNA-directed RNA polymerase
subunit M - Methanosarcina mazei (Methanosarcina frisia)
Length = 107
Score = 44.8 bits (101), Expect = 0.003
Identities = 18/40 (45%), Positives = 24/40 (60%)
Frame = +1
Query: 328 PVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKY 447
P KC +CG + ++ QLRSADE +T F+ C KC Y
Sbjct: 62 PTTNAKCPECGNNTAAWWLRQLRSADESETRFFKCTKCGY 101
>UniRef50_A7D318 Cluster: Transcription factor TFIIS; n=1;
Halorubrum lacusprofundi ATCC 49239|Rep: Transcription
factor TFIIS - Halorubrum lacusprofundi ATCC 49239
Length = 108
Score = 44.8 bits (101), Expect = 0.003
Identities = 18/45 (40%), Positives = 27/45 (60%)
Frame = +1
Query: 328 PVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETEN 462
P C +CG DR + Q+RSADE +T F+ C +C++K E+
Sbjct: 62 PKTTAHCPECGNDRAYWYMQQIRSADESETRFFVCTECEHKWRED 106
>UniRef50_Q2NEY4 Cluster: RpoM2; n=2; Methanobacteriaceae|Rep: RpoM2
- Methanosphaera stadtmanae (strain DSM 3091)
Length = 105
Score = 44.4 bits (100), Expect = 0.004
Identities = 31/96 (32%), Positives = 43/96 (44%), Gaps = 6/96 (6%)
Frame = +1
Query: 172 CYKSLAPVK----CYTCKAHYEADNYSKMKFQYTIHFNTISVITNENILHTDGPEG--PV 333
C K L P K CY C +YE K Y I+ + V +NI+ TD P
Sbjct: 7 CGKVLLPKKGILHCYGC--NYEKKLSDDEKQDYVINKD---VSDKQNIIVTDDSINTHPT 61
Query: 334 VERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 441
C +CG + + +Q+ +DE +T FY C KC
Sbjct: 62 TRGLCYRCGNRELEWWMVQMHRSDEAETRFYRCTKC 97
>UniRef50_A0RXH6 Cluster: DNA-directed RNA polymerase, subunit
M/Transcription elongation factor TFIIS; n=1;
Cenarchaeum symbiosum|Rep: DNA-directed RNA polymerase,
subunit M/Transcription elongation factor TFIIS -
Cenarchaeum symbiosum
Length = 103
Score = 44.0 bits (99), Expect = 0.005
Identities = 18/38 (47%), Positives = 24/38 (63%)
Frame = +1
Query: 334 VERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKY 447
++ +C KCG+ + LQ RSADE T FY CIKC +
Sbjct: 60 IKIECEKCGHGEAVWWMLQTRSADEPTTQFYRCIKCSH 97
>UniRef50_A2EBM6 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 109
Score = 43.6 bits (98), Expect = 0.007
Identities = 15/35 (42%), Positives = 24/35 (68%)
Frame = +1
Query: 337 ERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 441
+ +C KCG++ + +Q+RSADE T+F+ C KC
Sbjct: 68 QARCDKCGHNEAFFTEIQIRSADEPATLFFKCCKC 102
>UniRef50_A7TNI5 Cluster: Putative uncharacterized protein; n=1;
Vanderwaltozyma polyspora DSM 70294|Rep: Putative
uncharacterized protein - Vanderwaltozyma polyspora DSM
70294
Length = 323
Score = 43.6 bits (98), Expect = 0.007
Identities = 24/55 (43%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = +1
Query: 286 ITNENILHTDGP--EGPVVER-KCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 441
IT +N+ + G E V +R C KC ++SY LQ RSADE T F TC C
Sbjct: 262 ITRQNLFNAQGATIERSVTDRFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEAC 316
>UniRef50_Q4DC35 Cluster: DNA-directed RNA polymerase subunit; n=2;
Trypanosoma cruzi|Rep: DNA-directed RNA polymerase
subunit - Trypanosoma cruzi
Length = 167
Score = 43.2 bits (97), Expect = 0.009
Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 7/109 (6%)
Frame = +1
Query: 145 VLAVGPYYPCYKSLAPVKCYTC---KAHYEADNYSKMKFQYTIHFNTISVITNENILHTD 315
+L + P++P + Y H N+S +KF T+ + + +
Sbjct: 55 LLLIEPHHPTNRFACSSCTYVAPIPSTHLLTVNHSLLKFNKTVEDDANVKANGIKTKNEE 114
Query: 316 GPEGPVVERKCAK----CGYDRMSYATLQLRSADEGQTVFYTCIKCKYK 450
G ++ +C C +R Y +Q+RSADE T F+ C+KC ++
Sbjct: 115 VDGGQLITVRCQNDEKFCDGNRAHYVQIQMRSADEPATTFFKCLKCGFQ 163
>UniRef50_Q2U4B9 Cluster: Transcription elongation factor
TFIIS/Cofactor of enhancer-binding protein Sp1; n=8;
Eurotiomycetidae|Rep: Transcription elongation factor
TFIIS/Cofactor of enhancer-binding protein Sp1 -
Aspergillus oryzae
Length = 304
Score = 43.2 bits (97), Expect = 0.009
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = +1
Query: 343 KCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 441
+C KCG +++Y Q RSADE T+F TC+ C
Sbjct: 266 QCGKCGQRKVTYTEAQTRSADEPMTLFCTCLNC 298
>UniRef50_A4S3C9 Cluster: Predicted protein; n=2; Ostreococcus|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 173
Score = 42.7 bits (96), Expect = 0.012
Identities = 17/33 (51%), Positives = 21/33 (63%)
Frame = +1
Query: 343 KCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 441
KC KC + +Y LQ RSADE T F TC++C
Sbjct: 134 KCGKCKQRKCTYYQLQTRSADEPMTTFVTCVEC 166
>UniRef50_Q4DDP9 Cluster: DNA-directed RNA polymerase, putative;
n=2; Trypanosoma cruzi|Rep: DNA-directed RNA polymerase,
putative - Trypanosoma cruzi
Length = 158
Score = 42.7 bits (96), Expect = 0.012
Identities = 21/44 (47%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +1
Query: 337 ERKCAKCGYDRMSYA-TLQLRSADEGQTVFYTCIKCKYKETENS 465
E C CG R Q+RSADEGQT+FY CI C + NS
Sbjct: 115 EAFCGTCGVHRQCKVFARQIRSADEGQTIFYQCITCNAEWQLNS 158
>UniRef50_Q2P9W0 Cluster: RNA polymerase I subunit RPA12; n=2;
Trypanosoma brucei|Rep: RNA polymerase I subunit RPA12 -
Trypanosoma brucei brucei
Length = 151
Score = 42.7 bits (96), Expect = 0.012
Identities = 22/44 (50%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +1
Query: 337 ERKCAKCGYDRMSYA-TLQLRSADEGQTVFYTCIKCKYKETENS 465
E C KCG R Q+RSADEGQTVFY C C + NS
Sbjct: 108 EAFCEKCGVPRKCKVFARQIRSADEGQTVFYQCTSCDSEWQLNS 151
>UniRef50_Q8ZTX9 Cluster: DNA-directed RNA polymerase subunit M;
n=7; Thermoprotei|Rep: DNA-directed RNA polymerase
subunit M - Pyrobaculum aerophilum
Length = 110
Score = 42.7 bits (96), Expect = 0.012
Identities = 30/81 (37%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Frame = +1
Query: 211 KAHYEADNYSKMKFQYTIHFNTISVITNENILHTDG-PEGPVVE-RKCAKCGYDRMSYAT 384
K YE + +K +Y T N I+ D P P V+ R C KCG+D
Sbjct: 26 KCGYEEEVSQDVKNRY--QSKTAVESRNSVIVVADTTPNLPKVKTRGCPKCGHDEAYVWV 83
Query: 385 LQLRSADEGQTVFYTCIKCKY 447
Q R+ADE T FY C KC Y
Sbjct: 84 QQTRAADEPPTRFYRCTKCGY 104
>UniRef50_Q9ZVH8 Cluster: Putative elongation factor; n=5;
Magnoliophyta|Rep: Putative elongation factor -
Arabidopsis thaliana (Mouse-ear cress)
Length = 378
Score = 42.3 bits (95), Expect = 0.016
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +1
Query: 343 KCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 441
KC +CG + +Y +Q RSADE T + TC+ C
Sbjct: 339 KCGRCGQRKCTYYQMQTRSADEPMTTYVTCVNC 371
>UniRef50_A4RUS3 Cluster: Predicted protein; n=5; Eukaryota|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 120
Score = 42.3 bits (95), Expect = 0.016
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +1
Query: 346 CAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 441
C C +D + +Q+RSADE +VFY C+KC
Sbjct: 82 CPGCAHDEAYFMQIQIRSADEPMSVFYKCVKC 113
>UniRef50_A3LW94 Cluster: DNA-directed RNA polymerase subunit; n=10;
Fungi/Metazoa group|Rep: DNA-directed RNA polymerase
subunit - Pichia stipitis (Yeast)
Length = 111
Score = 42.3 bits (95), Expect = 0.016
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = +1
Query: 355 CGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETEN 462
CG ++ + LQ+RSADE T FY C+ C +K EN
Sbjct: 76 CGGNKAYFFQLQIRSADEPMTTFYKCVNCGHKWKEN 111
>UniRef50_A3DM83 Cluster: Transcription factor S; n=1;
Staphylothermus marinus F1|Rep: Transcription factor S -
Staphylothermus marinus (strain ATCC 43588 / DSM 3639 /
F1)
Length = 104
Score = 41.9 bits (94), Expect = 0.021
Identities = 18/37 (48%), Positives = 21/37 (56%)
Frame = +1
Query: 337 ERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKY 447
E C KCGY Y +Q R+ADE T FY C +C Y
Sbjct: 62 EVTCPKCGYHEAYYWIVQTRAADEPPTRFYKCRRCGY 98
>UniRef50_P07273 Cluster: Transcription elongation factor S-II; n=5;
Saccharomycetales|Rep: Transcription elongation factor
S-II - Saccharomyces cerevisiae (Baker's yeast)
Length = 309
Score = 41.9 bits (94), Expect = 0.021
Identities = 24/58 (41%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +1
Query: 277 ISVITNENILHTDGP--EGPVVER-KCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 441
I I +N+ + G E V +R C KC ++SY LQ RSADE T F TC C
Sbjct: 245 IEEIAKQNLYNAQGATIERSVTDRFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEAC 302
>UniRef50_P49373 Cluster: Transcription elongation factor S-II; n=1;
Schizosaccharomyces pombe|Rep: Transcription elongation
factor S-II - Schizosaccharomyces pombe (Fission yeast)
Length = 293
Score = 41.9 bits (94), Expect = 0.021
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +1
Query: 286 ITNENILHTDG--PEGPVVER-KCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 441
+ EN+ H G P+ V + C KC ++SY +Q RSADE T F C C
Sbjct: 232 LEQENLFHAQGAKPQKAVTDLFTCGKCKQKKVSYYQMQTRSADEPMTTFCECTVC 286
>UniRef50_Q07271 Cluster: DNA-directed RNA polymerase subunit M;
n=4; Sulfolobaceae|Rep: DNA-directed RNA polymerase
subunit M - Sulfolobus acidocaldarius
Length = 111
Score = 41.9 bits (94), Expect = 0.021
Identities = 29/85 (34%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Frame = +1
Query: 196 KCYTCKAHYEADNYSKMKFQYTIHFNTISVITNENILHTDGPE-GPVVER--KCAKCGYD 366
KC C + + +N + K I S +L +D P+ G + R C CG D
Sbjct: 23 KCSKC-GYIDTENQKEAKITTVIKH---SAKEKTLVLESDMPKTGVQLTRGISCPSCGND 78
Query: 367 RMSYATLQLRSADEGQTVFYTCIKC 441
+ LQ RSADE T FY C KC
Sbjct: 79 EAYFWILQTRSADEPATRFYKCTKC 103
>UniRef50_Q586X9 Cluster: Transcription elongation factor S-II,
putative; n=1; Trypanosoma brucei|Rep: Transcription
elongation factor S-II, putative - Trypanosoma brucei
Length = 467
Score = 41.5 bits (93), Expect = 0.028
Identities = 18/40 (45%), Positives = 24/40 (60%)
Frame = +1
Query: 343 KCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETEN 462
+C +C + LQ+RSADE T F CIKCK+ +EN
Sbjct: 428 ECPECHGRECEWRELQIRSADEPTTKFIKCIKCKHNWSEN 467
>UniRef50_Q4Q100 Cluster: Transcription factor S-II-like protein;
n=3; Leishmania|Rep: Transcription factor S-II-like
protein - Leishmania major
Length = 254
Score = 41.5 bits (93), Expect = 0.028
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +1
Query: 331 VVERKCAKCGYDRMSYA-TLQLRSADEGQTVFYTCIKCKYKETENS 465
+ E C CG R Q RSADEGQT+F+ C KC + +NS
Sbjct: 209 IEEAFCEMCGVHRPCKTFARQTRSADEGQTIFFQCTKCSSEWQQNS 254
>UniRef50_Q5KEF1 Cluster: RNA polymerase III smallest subunit,
putative; n=2; Filobasidiella neoformans|Rep: RNA
polymerase III smallest subunit, putative - Cryptococcus
neoformans (Filobasidiella neoformans)
Length = 132
Score = 41.5 bits (93), Expect = 0.028
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = +1
Query: 346 CAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETENS 465
C KC + R + +Q+RSADE T FY C +C ++ E S
Sbjct: 68 CPKCDHRRAYFRQMQIRSADEPMTTFYKCCECGHQWREVS 107
>UniRef50_A4R9M8 Cluster: Putative uncharacterized protein; n=1;
Magnaporthe grisea|Rep: Putative uncharacterized protein
- Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 131
Score = 41.5 bits (93), Expect = 0.028
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Frame = +1
Query: 202 YTCKA-HYEADNYSKMKFQYTIHFNTISVITNENILHTDG--PEGPVVERKCAKCGYDRM 372
+TC+ HY + + F+ ++ S + I+ G P P ++ C CG+D M
Sbjct: 46 FTCRTCHYTTNASNTCVFRNELNS---SASLHAGIIEGMGKDPTLPRAKKTCQYCGFDEM 102
Query: 373 SYATLQLRSADEGQTVFYTCIKCKYKETE 459
+ Q R+A+ G Y C++C +T+
Sbjct: 103 VFFQAQQRTAETGMKQIYVCVECSKPQTD 131
>UniRef50_P52652 Cluster: Putative transcription elongation factor
S-II; n=2; Caenorhabditis|Rep: Putative transcription
elongation factor S-II - Caenorhabditis elegans
Length = 308
Score = 41.5 bits (93), Expect = 0.028
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +1
Query: 343 KCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 441
KC KCG +Y LQ RS+DE T F C++C
Sbjct: 269 KCGKCGKKNCTYTQLQTRSSDEPMTTFVFCLEC 301
>UniRef50_Q387Z6 Cluster: RNA polymerase III C11 subunit, putative;
n=1; Trypanosoma brucei|Rep: RNA polymerase III C11
subunit, putative - Trypanosoma brucei
Length = 126
Score = 41.1 bits (92), Expect = 0.037
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Frame = +1
Query: 325 GPVVERKCA----KCGYDRMSYATLQLRSADEGQTVFYTCIKCKYK 450
G V+ +C +C DR Y +Q+RSADE T F+ C+KC ++
Sbjct: 77 GQVITVRCQNDEKQCDGDRAHYVQIQMRSADEPATTFFKCLKCGFQ 122
>UniRef50_A0B7Y7 Cluster: Transcription factor TFIIS; n=1;
Methanosaeta thermophila PT|Rep: Transcription factor
TFIIS - Methanosaeta thermophila (strain DSM 6194 / PT)
(Methanothrixthermophila (strain DSM 6194 / PT))
Length = 85
Score = 41.1 bits (92), Expect = 0.037
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +1
Query: 301 ILHTDGPEGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 441
+L + P + KC +CG D + QLR+ADE + F+ C KC
Sbjct: 31 VLEQESAGLPTTKAKCPECGNDTAYWWLRQLRAADESEVRFFRCTKC 77
>UniRef50_Q4N8B9 Cluster: Transcription elongation factor SII,
putative; n=1; Theileria parva|Rep: Transcription
elongation factor SII, putative - Theileria parva
Length = 324
Score = 40.7 bits (91), Expect = 0.049
Identities = 17/34 (50%), Positives = 20/34 (58%)
Frame = +1
Query: 343 KCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCK 444
KC KC +Y LQ RS+DE T F TC+ CK
Sbjct: 286 KCNKCNSKVTTYYQLQTRSSDEPMTTFVTCLNCK 319
>UniRef50_Q8SS71 Cluster: TRANSCRIPTION ELONGATION FACTOR SII; n=1;
Encephalitozoon cuniculi|Rep: TRANSCRIPTION ELONGATION
FACTOR SII - Encephalitozoon cuniculi
Length = 257
Score = 40.7 bits (91), Expect = 0.049
Identities = 17/30 (56%), Positives = 19/30 (63%)
Frame = +1
Query: 343 KCAKCGYDRMSYATLQLRSADEGQTVFYTC 432
KC+KCG + SY LQ RS DE T F TC
Sbjct: 219 KCSKCGERKCSYRQLQTRSGDEPMTTFVTC 248
>UniRef50_A7F3K8 Cluster: Predicted protein; n=1; Sclerotinia
sclerotiorum 1980|Rep: Predicted protein - Sclerotinia
sclerotiorum 1980
Length = 95
Score = 40.7 bits (91), Expect = 0.049
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Frame = +1
Query: 334 VERKCAK----CGYDRMSYATLQLRSADEGQTVFYTCIKCKY 447
V+R C C + M++ +Q+R ADEG T+ YTC +C Y
Sbjct: 48 VKRSCENPNIDCPAEEMTFRNVQMRGADEGSTIIYTCPECGY 89
>UniRef50_Q97AQ6 Cluster: Transcription factor [TFIIS/RPB9]; n=5;
Thermoplasmatales|Rep: Transcription factor [TFIIS/RPB9]
- Thermoplasma volcanium
Length = 106
Score = 40.7 bits (91), Expect = 0.049
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = +1
Query: 346 CAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETE 459
C +C + Y Q RSADE +T FYTC +C Y+ E
Sbjct: 68 CPRCHHKGARYVLKQTRSADEPETKFYTCEECGYRWRE 105
>UniRef50_A6QWZ4 Cluster: Predicted protein; n=1; Ajellomyces
capsulatus NAm1|Rep: Predicted protein - Ajellomyces
capsulatus NAm1
Length = 378
Score = 40.3 bits (90), Expect = 0.065
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +1
Query: 343 KCAKCGYDRMSYATLQLRSADEGQTVFYTCI 435
+C KCG +++Y Q RSADE T+F TC+
Sbjct: 334 QCGKCGQKKVTYTEAQTRSADEPMTLFCTCV 364
>UniRef50_Q04307 Cluster: DNA-directed RNA polymerase III subunit
RPC10; n=11; Ascomycota|Rep: DNA-directed RNA polymerase
III subunit RPC10 - Saccharomyces cerevisiae (Baker's
yeast)
Length = 110
Score = 40.3 bits (90), Expect = 0.065
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +1
Query: 355 CGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETEN 462
CG + + LQ+RSADE T FY C+ C ++ EN
Sbjct: 75 CGGESAYFFQLQIRSADEPMTTFYKCVNCGHRWKEN 110
>UniRef50_UPI0000E47C8A Cluster: PREDICTED: similar to
ENSANGP00000027484; n=1; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to ENSANGP00000027484
- Strongylocentrotus purpuratus
Length = 255
Score = 39.9 bits (89), Expect = 0.086
Identities = 19/59 (32%), Positives = 28/59 (47%)
Frame = +1
Query: 274 TISVITNENILHTDGPEGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYK 450
T I + + HT+G ++ C KC +Y +Q RSADE T F C C ++
Sbjct: 195 TKEAINDHQLAHTEGTRSALLT--CGKCRKKNCTYNQMQTRSADEPMTTFVFCNDCGHR 251
>UniRef50_Q2H0C1 Cluster: DNA-directed RNA polymerase subunit; n=2;
Sordariales|Rep: DNA-directed RNA polymerase subunit -
Chaetomium globosum (Soil fungus)
Length = 139
Score = 39.9 bits (89), Expect = 0.086
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = +1
Query: 343 KCAKCGYDRMSYATLQLRSADEGQTVFYTC 432
+C KCG + Y+ +Q RSADEG T+ Y C
Sbjct: 83 ECPKCGKTGIRYSEVQQRSADEGSTIIYNC 112
>UniRef50_A6RN27 Cluster: Transcription elongation factor S-II; n=6;
Pezizomycotina|Rep: Transcription elongation factor S-II
- Botryotinia fuckeliana B05.10
Length = 301
Score = 39.9 bits (89), Expect = 0.086
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = +1
Query: 346 CAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYK 450
C KCG ++SY+ Q RSADE T F C C ++
Sbjct: 263 CGKCGQKKVSYSQAQTRSADEPMTTFCECQVCGHR 297
>UniRef50_UPI00004998C5 Cluster: RNA polymerase III subunit; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: RNA polymerase III
subunit - Entamoeba histolytica HM-1:IMSS
Length = 107
Score = 39.5 bits (88), Expect = 0.11
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
Frame = +1
Query: 196 KCYTCKAHYEADNYSKMKFQYTIHFNTISVITNENILHTDGPEGPVVERKCAKCGYDRMS 375
KC TC Y+ K+ ++ + I + E E C KCG++
Sbjct: 23 KCNTCP--YKFTFNKKIVYESELKRKQIDAVLGEE----QWKNAQKTEIICEKCGHNSAY 76
Query: 376 YATLQLRSADEGQTVFYTC--IKCKYK 450
+ +Q+RSADE T FY C C Y+
Sbjct: 77 FMQIQIRSADEPMTTFYKCANFDCGYQ 103
>UniRef50_A5JZL5 Cluster: Transcription elongation factor, putative;
n=5; Plasmodium|Rep: Transcription elongation factor,
putative - Plasmodium vivax
Length = 435
Score = 39.5 bits (88), Expect = 0.11
Identities = 19/36 (52%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Frame = +1
Query: 337 ERKCAKC-GYDRMSYATLQLRSADEGQTVFYTCIKC 441
E +C KC GY+ + Y LQ RS+DE T F TC+KC
Sbjct: 395 EFQCFKCKGYETV-YHQLQTRSSDEPMTTFVTCLKC 429
>UniRef50_A3LRC5 Cluster: Predicted protein; n=5;
Saccharomycetales|Rep: Predicted protein - Pichia
stipitis (Yeast)
Length = 294
Score = 39.5 bits (88), Expect = 0.11
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 346 CAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 441
C KC + ++SY +Q RSADE T F TC C
Sbjct: 256 CGKCKHKKVSYYQMQTRSADEPLTTFCTCENC 287
>UniRef50_UPI0000499ED2 Cluster: hypothetical protein 230.t00020;
n=1; Entamoeba histolytica HM-1:IMSS|Rep: hypothetical
protein 230.t00020 - Entamoeba histolytica HM-1:IMSS
Length = 78
Score = 39.1 bits (87), Expect = 0.15
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = +1
Query: 337 ERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKY 447
E KC KCG ++ Q RSADE T F TC C +
Sbjct: 36 EFKCGKCGSRKIQETLAQTRSADEPMTRFLTCASCGF 72
>UniRef50_A0CQT2 Cluster: Chromosome undetermined scaffold_24, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_24,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 104
Score = 39.1 bits (87), Expect = 0.15
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +1
Query: 331 VVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYK 450
+ + +C KCG + + Q R ADE T+ + CIKC +K
Sbjct: 60 ITDEQCDKCGCLKAFFWEFQTRGADEQSTISFECIKCGHK 99
>UniRef50_Q4P1X5 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 315
Score = 39.1 bits (87), Expect = 0.15
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +1
Query: 343 KCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYK 450
+C +C + Y +Q RSADE T F TC C +K
Sbjct: 276 QCGRCKQRKTRYYQMQTRSADEPMTTFVTCTNCNHK 311
>UniRef50_Q4UH96 Cluster: Transcription elongation factor, putative;
n=1; Theileria annulata|Rep: Transcription elongation
factor, putative - Theileria annulata
Length = 418
Score = 38.7 bits (86), Expect = 0.20
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = +1
Query: 343 KCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 441
KC KC +Y LQ RS+DE T F TC+ C
Sbjct: 380 KCNKCNSKITTYYQLQTRSSDEPMTTFVTCLNC 412
>UniRef50_Q5YFI0 Cluster: Transcription elongation factor TFIIS;
n=2; Singapore grouper iridovirus|Rep: Transcription
elongation factor TFIIS - Singapore grouper iridovirus
Length = 92
Score = 38.3 bits (85), Expect = 0.26
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +1
Query: 319 PEGPVVER--KCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETE 459
P PV E +C KCG ++ Q RSADE TVF C C + T+
Sbjct: 44 PMAPVEEGTLQCPKCGCKKVHVVQRQTRSADEPMTVFAVCSNCGKRWTQ 92
>UniRef50_Q4Q3Q4 Cluster: Transcription elongation factor-like
protein; n=3; Leishmania|Rep: Transcription elongation
factor-like protein - Leishmania major
Length = 473
Score = 38.3 bits (85), Expect = 0.26
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +1
Query: 343 KCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETE 459
KC +CG ++ Q RSADE T + TC+ CK T+
Sbjct: 434 KCGRCGKRHCTFYEQQTRSADEPTTKYITCLDCKNTWTQ 472
>UniRef50_Q6C6I8 Cluster: Similar to DEHA0C15686g Debaryomyces
hansenii; n=1; Yarrowia lipolytica|Rep: Similar to
DEHA0C15686g Debaryomyces hansenii - Yarrowia lipolytica
(Candida lipolytica)
Length = 295
Score = 38.3 bits (85), Expect = 0.26
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +1
Query: 346 CAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 441
C KC ++SY +Q RSADE T F TC C
Sbjct: 257 CGKCKQKKVSYYQMQTRSADEPLTTFCTCENC 288
>UniRef50_Q9YPH8 Cluster: Transcription elongation factor SII; n=8;
Chlorovirus|Rep: Transcription elongation factor SII -
Chlorella virus
Length = 180
Score = 37.9 bits (84), Expect = 0.35
Identities = 19/43 (44%), Positives = 24/43 (55%)
Frame = +1
Query: 313 DGPEGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 441
D P+G + +C KC + SY +Q RSADE TVF C C
Sbjct: 135 DMPDGML---QCGKCKSRKTSYYEMQTRSADEPMTVFAKCHSC 174
>UniRef50_A7AWE5 Cluster: Transcription factor S-II (TFIIS)and
transcription factor S-II (TFIIS) central domain
containing protein; n=1; Babesia bovis|Rep:
Transcription factor S-II (TFIIS)and transcription
factor S-II (TFIIS) central domain containing protein -
Babesia bovis
Length = 302
Score = 37.9 bits (84), Expect = 0.35
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = +1
Query: 343 KCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 441
KC KC Y LQ RS+DE T F TC++C
Sbjct: 264 KCLKCHSMETVYYQLQTRSSDEPMTTFVTCLEC 296
>UniRef50_Q0UVI1 Cluster: Predicted protein; n=1; Phaeosphaeria
nodorum|Rep: Predicted protein - Phaeosphaeria nodorum
(Septoria nodorum)
Length = 301
Score = 37.9 bits (84), Expect = 0.35
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +1
Query: 337 ERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 441
E +C KC +SY+ Q RSADE T F C+ C
Sbjct: 260 EFQCGKCKKKMVSYSQAQTRSADEPMTTFCECMNC 294
>UniRef50_Q2FPF9 Cluster: Transcription factor S; n=3;
Euryarchaeota|Rep: Transcription factor S -
Methanospirillum hungatei (strain JF-1 / DSM 864)
Length = 107
Score = 37.9 bits (84), Expect = 0.35
Identities = 24/86 (27%), Positives = 34/86 (39%)
Frame = +1
Query: 199 CYTCKAHYEADNYSKMKFQYTIHFNTISVITNENILHTDGPEGPVVERKCAKCGYDRMSY 378
C +C E +KMK I ++ + + T P + KC CG +
Sbjct: 21 CTSCGWEKEGHGETKMKITDKRKEKEIVIVDDTESVRTL----PTIAVKCPNCGNGEAFW 76
Query: 379 ATLQLRSADEGQTVFYTCIKCKYKET 456
QLRSADE + F+ C K T
Sbjct: 77 WLRQLRSADESEVRFFRCTNSKCNHT 102
>UniRef50_Q9N4B7 Cluster: DNA-directed RNA polymerase subunit; n=9;
Bilateria|Rep: DNA-directed RNA polymerase subunit -
Caenorhabditis elegans
Length = 108
Score = 37.5 bits (83), Expect = 0.46
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +1
Query: 331 VVERKCAKCGYDRMSYATLQLRSADEGQTVFYTC 432
V + C C + R + LQ RSADE T+FY C
Sbjct: 64 VTDETCPVCSHGRAYFMQLQTRSADEPSTIFYRC 97
>UniRef50_Q5CVE1 Cluster: Transcription elongation factor TFIIS;
n=2; Cryptosporidium|Rep: Transcription elongation
factor TFIIS - Cryptosporidium parvum Iowa II
Length = 332
Score = 37.5 bits (83), Expect = 0.46
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +1
Query: 346 CAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 441
C KC ++ +Y +Q RSADE T F C+ C
Sbjct: 295 CGKCKTNKTTYYQMQTRSADEPMTTFVRCLNC 326
>UniRef50_Q197A5 Cluster: Putative uncharacterized protein; n=1;
Aedes taeniorhynchus iridescent virus|Rep: Putative
uncharacterized protein - Aedes taeniorhynchus
iridescent virus
Length = 137
Score = 37.1 bits (82), Expect = 0.60
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +1
Query: 343 KCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETE 459
+C KC ++ + + Q RS DE T+F +C CK + TE
Sbjct: 99 RCGKCDCTKILWFSKQTRSMDEPTTIFASCSNCKTRWTE 137
>UniRef50_A0DS61 Cluster: Chromosome undetermined scaffold_61, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_61,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 300
Score = 36.7 bits (81), Expect = 0.80
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +1
Query: 346 CAKCGYDRMSYAT-LQLRSADEGQTVFYTCIKCKYKETEN 462
C CG +M +Q R++DE T FY C+ C ET N
Sbjct: 260 CNNCGQKQMKLVNEIQTRASDEPSTKFYECLNCGIGETTN 299
>UniRef50_Q9P9I8 Cluster: Archaeal transcription factor S; n=2;
Methanococcaceae|Rep: Archaeal transcription factor S -
Methanococcus thermolithotrophicus
Length = 105
Score = 36.7 bits (81), Expect = 0.80
Identities = 25/83 (30%), Positives = 34/83 (40%)
Frame = +1
Query: 193 VKCYTCKAHYEADNYSKMKFQYTIHFNTISVITNENILHTDGPEGPVVERKCAKCGYDRM 372
+KC C E N ++ +Y + I E + D P +C CG
Sbjct: 19 LKCTVCGFEEELGNRTE---EYELK-EKIEAKKQEVTVIEDVDTLPTTRIECPSCGNMEA 74
Query: 373 SYATLQLRSADEGQTVFYTCIKC 441
S+ Q R ADE +T FY C KC
Sbjct: 75 SWWLQQTRCADEPETRFYKCKKC 97
>UniRef50_Q677Z7 Cluster: DNA-directed RNA polymerase subunit M;
n=1; Lymphocystis disease virus - isolate China|Rep:
DNA-directed RNA polymerase subunit M - Lymphocystis
disease virus - isolate China
Length = 79
Score = 36.3 bits (80), Expect = 1.1
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +1
Query: 343 KCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYK 450
KC KC + + +Q+RSADE ++ TC C YK
Sbjct: 40 KCKKCKKNNVLSTHIQIRSADEPMSLAATCYSCGYK 75
>UniRef50_Q1JT63 Cluster: Transcription elongation factor s-II,
putative; n=1; Toxoplasma gondii RH|Rep: Transcription
elongation factor s-II, putative - Toxoplasma gondii RH
Length = 418
Score = 36.3 bits (80), Expect = 1.1
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +1
Query: 346 CAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 441
C KC + Y +Q RS+DE T F TC++C
Sbjct: 381 CFKCRTTKTVYFQMQTRSSDEPMTTFVTCLEC 412
>UniRef50_Q5V537 Cluster: DNA-directed RNA-polymerase subunit M;
n=6; Halobacteriaceae|Rep: DNA-directed RNA-polymerase
subunit M - Haloarcula marismortui (Halobacterium
marismortui)
Length = 107
Score = 36.3 bits (80), Expect = 1.1
Identities = 23/87 (26%), Positives = 37/87 (42%)
Frame = +1
Query: 199 CYTCKAHYEADNYSKMKFQYTIHFNTISVITNENILHTDGPEGPVVERKCAKCGYDRMSY 378
C +C A D F T + +I E + +G + + C +CG+ + Y
Sbjct: 20 CQSCGARVAKDEDRAAAFVSTDEQSDDELIETEEGSNFEG-KPTADDVTCEECGHGKAWY 78
Query: 379 ATLQLRSADEGQTVFYTCIKCKYKETE 459
Q SADE T F+ C +C ++ E
Sbjct: 79 TIKQTGSADEPPTRFFKCQECGHRWRE 105
>UniRef50_Q0W2J5 Cluster: Archaeal transcription factor S; n=4;
Euryarchaeota|Rep: Archaeal transcription factor S -
Uncultured methanogenic archaeon RC-I
Length = 106
Score = 36.3 bits (80), Expect = 1.1
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +1
Query: 337 ERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 441
E KC CG + + QLRSADE + F+ C +C
Sbjct: 64 EVKCPDCGNQKAYWWMRQLRSADESEVRFFRCTEC 98
>UniRef50_Q9Y2Y1 Cluster: DNA-directed RNA polymerase III subunit
RPC10; n=21; Fungi/Metazoa group|Rep: DNA-directed RNA
polymerase III subunit RPC10 - Homo sapiens (Human)
Length = 108
Score = 36.3 bits (80), Expect = 1.1
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = +1
Query: 346 CAKCGYDRMSYATLQLRSADEGQTVFYTC 432
C KC + R + LQ RSADE T FY C
Sbjct: 69 CPKCEHPRAYFMQLQTRSADEPMTTFYKC 97
>UniRef50_UPI000049A55E Cluster: hypothetical protein 103.t00039;
n=1; Entamoeba histolytica HM-1:IMSS|Rep: hypothetical
protein 103.t00039 - Entamoeba histolytica HM-1:IMSS
Length = 431
Score = 35.9 bits (79), Expect = 1.4
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = -2
Query: 775 QHKKNIWTNVYNFNYSDLILLHVIFKTWFLRLISIEFTV*KLSFQEMELKLRTSYMVINF 596
+H +NIWT++ N + ++L V+F WF E T + E K S++ NF
Sbjct: 193 EHIQNIWTSIKQINKNMCLILIVVFVGWFAWTPIKENTQLYFIYYVFEDKQDLSFLYFNF 252
Query: 595 N 593
N
Sbjct: 253 N 253
>UniRef50_Q9DGD2 Cluster: Transcription elongation factor XSII-K1;
n=7; Euteleostomi|Rep: Transcription elongation factor
XSII-K1 - Xenopus laevis (African clawed frog)
Length = 645
Score = 35.9 bits (79), Expect = 1.4
Identities = 19/56 (33%), Positives = 26/56 (46%)
Frame = +1
Query: 274 TISVITNENILHTDGPEGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 441
T I + T G + +++ C KC SY +Q RSADE T F C +C
Sbjct: 585 TQEAIREHQMAKTGGTQTDLLQ--CEKCKKKNCSYNQVQTRSADEPMTTFVLCNEC 638
>UniRef50_Q5UQS8 Cluster: TFII-like transcription factor; n=1;
Acanthamoeba polyphaga mimivirus|Rep: TFII-like
transcription factor - Mimivirus
Length = 173
Score = 35.9 bits (79), Expect = 1.4
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
Frame = +1
Query: 181 SLAPVKCYTCKAHYEADNYSKMKFQYTIHFNTISVITNENILHTDGPEGPVVERK-CAKC 357
++ +K K Y A N + + + N I +I + + + VE K C C
Sbjct: 78 TIKKIKKLIDKNKYNAYNLAFLNPEELNKDNWIKIIARKQMTEETLNQMATVEWKPCYAC 137
Query: 358 GYDRMSYATLQLRSADEGQTVFYTCIKC 441
+ LQ RSADE T FY C C
Sbjct: 138 KNTSYHFYQLQTRSADEPMTTFYICKNC 165
>UniRef50_P27948 Cluster: Transcription factor S-II-related protein;
n=2; African swine fever virus|Rep: Transcription factor
S-II-related protein - African swine fever virus (strain
BA71V) (ASFV)
Length = 243
Score = 35.5 bits (78), Expect = 1.8
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 343 KCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYK 450
KC C +Y +Q R+ DE T+F TC KC ++
Sbjct: 205 KCPNCKQRMCTYREVQTRALDEPSTIFCTCKKCGHE 240
>UniRef50_Q91FH5 Cluster: 349L; n=1; Invertebrate iridescent virus
6|Rep: 349L - Chilo iridescent virus (CIV) (Insect
iridescent virus type 6)
Length = 140
Score = 35.1 bits (77), Expect = 2.4
Identities = 17/36 (47%), Positives = 21/36 (58%)
Frame = +1
Query: 343 KCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYK 450
KC KCG +R+ + Q RS DE +VF C CK K
Sbjct: 103 KC-KCGSERVFSFSKQTRSGDESTSVFALCSSCKSK 137
>UniRef50_Q3KTM0 Cluster: FRO1-like protein; n=13;
Magnoliophyta|Rep: FRO1-like protein - Arabidopsis
thaliana (Mouse-ear cress)
Length = 747
Score = 35.1 bits (77), Expect = 2.4
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Frame = -3
Query: 366 VVTAFSAFSLHNWTLRTIS-M*YILICDHRYSIEMYCVLKFHFTIIISLIMCFTSVAFHR 190
V + F ++++ +TLR ++ + Y + + SI + + F +I L M F + R
Sbjct: 145 VFSVFFLWAIYAYTLRNLNVLDYFHVLPNNRSIFLLELTGLRFGMIGLLCMVFLFLPISR 204
Query: 189 SQTLVARVIWTHSEHKTLYLVDNGHFTWTLF 97
L+ R+I EH T Y V GH T T F
Sbjct: 205 GSILL-RLIDIPFEHATRYHVWLGHITMTFF 234
>UniRef50_A7ASV0 Cluster: Transcription factor S-II protein,
putative; n=3; Piroplasmida|Rep: Transcription factor
S-II protein, putative - Babesia bovis
Length = 109
Score = 35.1 bits (77), Expect = 2.4
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +1
Query: 328 PVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETE 459
P + C C + ++Q RSADE T F+ C C+++ E
Sbjct: 66 PKIIAVCPSCHNKEAYFMSIQTRSADEPMTQFFVCTACRHRWKE 109
>UniRef50_A2RAZ1 Cluster: Complex: hRPC11 is a small; n=5;
Eurotiomycetidae|Rep: Complex: hRPC11 is a small -
Aspergillus niger
Length = 117
Score = 35.1 bits (77), Expect = 2.4
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +1
Query: 355 CGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETEN 462
C DR + LQ+RSADE T F C C + EN
Sbjct: 82 CNGDRAYFFQLQIRSADEPMTTFLKCTTCGARWREN 117
>UniRef50_P23193 Cluster: Transcription elongation factor A protein
1; n=41; Eumetazoa|Rep: Transcription elongation factor
A protein 1 - Homo sapiens (Human)
Length = 301
Score = 35.1 bits (77), Expect = 2.4
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 346 CAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 441
C KC +Y +Q RSADE T F C +C
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNEC 294
>UniRef50_Q6GZP4 Cluster: Transcription elongation factor SII; n=3;
Ranavirus|Rep: Transcription elongation factor SII -
Frog virus 3 (FV3)
Length = 92
Score = 34.7 bits (76), Expect = 3.2
Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +1
Query: 319 PEGPVVER--KCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 441
P G V E KC CG R+ Q RSADE T+F C +C
Sbjct: 44 PPGKVEEGTVKCPGCGSRRVHALQRQTRSADEPMTLFAMCSEC 86
>UniRef50_Q7QXB3 Cluster: GLP_741_50228_49188; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_741_50228_49188 - Giardia lamblia
ATCC 50803
Length = 346
Score = 34.7 bits (76), Expect = 3.2
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 343 KCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYK 450
+C KC + + Q RSADE T+ YTC C ++
Sbjct: 307 QCKKCKQETVVRLEKQTRSADEATTIEYTCSSCGHR 342
>UniRef50_Q4QAW0 Cluster: Transcription elongation factor, putative;
n=2; Leishmania|Rep: Transcription elongation factor,
putative - Leishmania major
Length = 333
Score = 34.7 bits (76), Expect = 3.2
Identities = 16/33 (48%), Positives = 17/33 (51%)
Frame = +1
Query: 343 KCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 441
KC CG S+ Q RS DE TV TC KC
Sbjct: 294 KCRVCGARDSSWEQRQTRSGDEPMTVIITCNKC 326
>UniRef50_O75764 Cluster: Transcription elongation factor A protein
3; n=21; Eutheria|Rep: Transcription elongation factor A
protein 3 - Homo sapiens (Human)
Length = 348
Score = 34.7 bits (76), Expect = 3.2
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 343 KCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 441
+C+KC +Y +Q RSADE T F C +C
Sbjct: 309 QCSKCKKKNCTYNQVQTRSADEPMTTFVLCNEC 341
>UniRef50_UPI0000DB6D42 Cluster: PREDICTED: similar to Phospholipase
D1 (PLD 1) (Choline phosphatase 1)
(Phosphatidylcholine-hydrolyzing phospholipase D1)
(rPLD1); n=2; Apocrita|Rep: PREDICTED: similar to
Phospholipase D1 (PLD 1) (Choline phosphatase 1)
(Phosphatidylcholine-hydrolyzing phospholipase D1)
(rPLD1) - Apis mellifera
Length = 1135
Score = 34.3 bits (75), Expect = 4.3
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = -3
Query: 171 RVIWTHSEHKTLYLVD--NGHFTWTLFPKYLHIR 76
R + TH + LY ++ +GHFTWT+ +Y HI+
Sbjct: 98 RSVTTHPLNPNLYTIEFRHGHFTWTIKKRYKHIQ 131
>UniRef50_Q6P0U5 Cluster: Zgc:77732; n=4; Clupeocephala|Rep:
Zgc:77732 - Danio rerio (Zebrafish) (Brachydanio rerio)
Length = 409
Score = 34.3 bits (75), Expect = 4.3
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 343 KCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 441
+C KC +Y +Q RSADE T F C +C
Sbjct: 370 QCGKCKKKNCTYNQVQTRSADEPMTTFVLCNEC 402
>UniRef50_Q4TIF2 Cluster: Chromosome undetermined SCAF2195, whole
genome shotgun sequence; n=1; Tetraodon
nigroviridis|Rep: Chromosome undetermined SCAF2195,
whole genome shotgun sequence - Tetraodon nigroviridis
(Green puffer)
Length = 255
Score = 34.3 bits (75), Expect = 4.3
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 343 KCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 441
+C KC +Y +Q RSADE T F C +C
Sbjct: 218 QCGKCKKKNCTYNQVQTRSADEPMTTFVLCNEC 250
>UniRef50_Q919I9 Cluster: CUN088 putative lef-5 late expression
factor, similar to AcMNPV ORF99; n=1; Culex nigripalpus
NPV|Rep: CUN088 putative lef-5 late expression factor,
similar to AcMNPV ORF99 - Culex nigripalpus NPV
Length = 266
Score = 33.9 bits (74), Expect = 5.6
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 355 CGYDRMSYATLQLRSADEGQTVFYTCIKCKY 447
C ++ ++Q RS DE T++ CI CKY
Sbjct: 231 CKHENTEQISVQQRSGDEAATIYVRCIDCKY 261
>UniRef50_Q54YG9 Cluster: RNA polymerase II elongation factor; n=1;
Dictyostelium discoideum AX4|Rep: RNA polymerase II
elongation factor - Dictyostelium discoideum AX4
Length = 319
Score = 33.9 bits (74), Expect = 5.6
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +1
Query: 343 KCAKCGYDRMSYATLQLRSADEGQTVFYTC 432
+C KC + +Y LQ RSADE T F C
Sbjct: 278 QCGKCKQRKCTYTQLQTRSADEPPTTFVKC 307
>UniRef50_Q4QDI8 Cluster: Putative uncharacterized protein; n=7;
Trypanosomatidae|Rep: Putative uncharacterized protein -
Leishmania major
Length = 594
Score = 33.9 bits (74), Expect = 5.6
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -3
Query: 210 TSVAFHRSQTLVARVIWTHSEHKTLYLVDNGHF-TW 106
T + FH+ T+ V W H H+TL + +GH TW
Sbjct: 318 TQLGFHKLSTMTTSVAW-HDSHETLVAIADGHLATW 352
>UniRef50_Q4QDH9 Cluster: RNA polymerase III C11 subunit, putative;
n=3; Leishmania|Rep: RNA polymerase III C11 subunit,
putative - Leishmania major
Length = 151
Score = 33.9 bits (74), Expect = 5.6
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +1
Query: 355 CGYDRMSYATLQLRSADEGQTVFYTCIKCKYK 450
C + + +Q+RSADE TVF+ C++C ++
Sbjct: 116 CQSTKAYFIQIQMRSADEPATVFFKCVECGHQ 147
>UniRef50_Q15560 Cluster: Transcription elongation factor A protein
2; n=55; Coelomata|Rep: Transcription elongation factor
A protein 2 - Homo sapiens (Human)
Length = 299
Score = 33.9 bits (74), Expect = 5.6
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 346 CAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 441
C KC +Y +Q RS+DE T F C +C
Sbjct: 261 CGKCRKKNCTYTQVQTRSSDEPMTTFVVCNEC 292
>UniRef50_Q6EU09 Cluster: DNA-directed RNA polymerase subunit; n=3;
Oryza sativa|Rep: DNA-directed RNA polymerase subunit -
Oryza sativa subsp. japonica (Rice)
Length = 110
Score = 33.5 bits (73), Expect = 7.4
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +1
Query: 328 PVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIK--CKYKETEN 462
P C +C Y +Q+RSADE + FY C + C++ E+
Sbjct: 64 PKTTTTCPRCQNGEAYYRQMQIRSADEPMSTFYKCCREECQFDWRED 110
>UniRef50_Q9GZ09 Cluster: Transcription elongation factor TFIIS;
n=2; Moneuplotes crassus|Rep: Transcription elongation
factor TFIIS - Euplotes crassus
Length = 328
Score = 33.5 bits (73), Expect = 7.4
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 346 CAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKY 447
C KC + ++ Q RSADE T F C+ C +
Sbjct: 291 CEKCKSKKTTFYEQQTRSADEPMTTFVQCLMCSH 324
>UniRef50_Q7QQW3 Cluster: DNA-directed RNA polymerase subunit; n=2;
Giardia intestinalis|Rep: DNA-directed RNA polymerase
subunit - Giardia lamblia ATCC 50803
Length = 105
Score = 33.5 bits (73), Expect = 7.4
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +1
Query: 337 ERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETEN 462
+ C C + + +Q+RS+DE + FY C +C ++ E+
Sbjct: 64 QNPCPVCAFPDAFWIQMQIRSSDEPMSRFYRCCQCAHQWRED 105
>UniRef50_Q5CPB7 Cluster: DNA-directed RNA polymerase 2 subunit;
n=2; Cryptosporidium|Rep: DNA-directed RNA polymerase 2
subunit - Cryptosporidium hominis
Length = 167
Score = 33.5 bits (73), Expect = 7.4
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +1
Query: 304 LHTDGPEGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 441
LH D G +E C CG++ + L R E T+ + C+ C
Sbjct: 68 LHQDPTLGRTLEWNCRGCGHNVAVFFQLPERVCSEAMTLVFVCVSC 113
>UniRef50_Q4X1W6 Cluster: DNA-directed RNA polymerase subunit; n=9;
Ascomycota|Rep: DNA-directed RNA polymerase subunit -
Aspergillus fumigatus (Sartorya fumigata)
Length = 128
Score = 33.5 bits (73), Expect = 7.4
Identities = 20/81 (24%), Positives = 33/81 (40%)
Frame = +1
Query: 199 CYTCKAHYEADNYSKMKFQYTIHFNTISVITNENILHTDGPEGPVVERKCAKCGYDRMSY 378
C TC A +Y + + + +T + + +D P P + C CG +
Sbjct: 46 CRTCHVGEPATSYCVYQNKLNSQVGDTAGVTQD--VGSD-PTLPRSNKPCPSCGEAEAVF 102
Query: 379 ATLQLRSADEGQTVFYTCIKC 441
Q RSA+ G ++Y C C
Sbjct: 103 FQSQQRSAETGMKLYYVCCAC 123
>UniRef50_UPI0000161EFD Cluster: Transcription factor SII homolog;
n=1; Lymphocystis disease virus 1|Rep: Transcription
factor SII homolog - Lymphocystis disease virus 1
Length = 89
Score = 33.1 bits (72), Expect = 9.8
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 343 KCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYK 450
KC KC ++ +Q RSADE ++ C C YK
Sbjct: 51 KCRKCKKTKIFSTHVQTRSADEPMSLIAMCYSCGYK 86
>UniRef50_Q22UN1 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 854
Score = 33.1 bits (72), Expect = 9.8
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Frame = +1
Query: 169 PCYKSLAPV-KCYTCKAHYEADN--YSKMKFQYTIHFNTISVITNENI--LHTDGPEGPV 333
PC++SL+ + + +T KA Y+ N Y KF+ T+H N I + + +++ E +
Sbjct: 716 PCFQSLSYIDQPFTQKAVYKLFNGAYKTQKFEVTLHINNILRFEKKLLQSIYSSKKENYI 775
Query: 334 VERKC 348
++KC
Sbjct: 776 FDKKC 780
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 690,641,238
Number of Sequences: 1657284
Number of extensions: 12642714
Number of successful extensions: 30119
Number of sequences better than 10.0: 133
Number of HSP's better than 10.0 without gapping: 28825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30104
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 80751996367
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -