Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_I22
         (893 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1259.03 |rpa12||DNA-directed RNA polymerase complex I subuni...    67   3e-12
SPAC22A12.05 |rpc11||DNA-directed RNA polymerase III complex sub...    46   5e-06
SPAC20H4.03c |tfs1||transcription elongation factor TFIIS |Schiz...    42   1e-04
SPAPYUG7.04c |rpb9||DNA-directed RNA polymerase II complex subun...    29   0.89 
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb...    26   6.3  
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   8.3  
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch...    26   8.3  

>SPCC1259.03 |rpa12||DNA-directed RNA polymerase complex I subunit
           Rpa12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 119

 Score = 67.3 bits (157), Expect = 3e-12
 Identities = 28/48 (58%), Positives = 34/48 (70%)
 Frame = +1

Query: 322 EGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETENS 465
           E   +E KC KCG D M++ TLQLRSADEG TVFY C +C YK + N+
Sbjct: 72  EAATIEEKCPKCGNDHMTFHTLQLRSADEGSTVFYECPRCAYKFSTNN 119


>SPAC22A12.05 |rpc11||DNA-directed RNA polymerase III complex
           subunit Rpc11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 46.4 bits (105), Expect = 5e-06
 Identities = 25/88 (28%), Positives = 39/88 (44%)
 Frame = +1

Query: 199 CYTCKAHYEADNYSKMKFQYTIHFNTISVITNENILHTDGPEGPVVERKCAKCGYDRMSY 378
           C TC  H+    +   + ++        V+  E    ++       E    KC  +R  +
Sbjct: 25  CRTCPYHFPISTFLYSRHEFA-QKEVDDVLGGEEAFESNQQTEVTCEN--TKCDNNRAYF 81

Query: 379 ATLQLRSADEGQTVFYTCIKCKYKETEN 462
             LQ+RSADE  + FY C KCK++  EN
Sbjct: 82  FQLQIRSADEPMSTFYRCTKCKFQWREN 109


>SPAC20H4.03c |tfs1||transcription elongation factor TFIIS
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 293

 Score = 41.9 bits (94), Expect = 1e-04
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = +1

Query: 286 ITNENILHTDG--PEGPVVER-KCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 441
           +  EN+ H  G  P+  V +   C KC   ++SY  +Q RSADE  T F  C  C
Sbjct: 232 LEQENLFHAQGAKPQKAVTDLFTCGKCKQKKVSYYQMQTRSADEPMTTFCECTVC 286


>SPAPYUG7.04c |rpb9||DNA-directed RNA polymerase II complex subunit
           Rpb9 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 113

 Score = 29.1 bits (62), Expect = 0.89
 Identities = 18/83 (21%), Positives = 35/83 (42%)
 Frame = +1

Query: 199 CYTCKAHYEADNYSKMKFQYTIHFNTISVITNENILHTDGPEGPVVERKCAKCGYDRMSY 378
           C  C  + E    SK+ +++ +  + +   T  +   TD P  P  +++C +C      +
Sbjct: 29  CRNCD-YSEIAATSKV-YRHELQSSNVENTTVSHDASTD-PTLPRSDKECPRCHQHEAVF 85

Query: 379 ATLQLRSADEGQTVFYTCIKCKY 447
                R  D   T+ Y C+ C +
Sbjct: 86  YQTHSRRGDTMMTLIYVCVHCGF 108


>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 983

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 469 RLLYTSFKVVKGKLGNRIIVSESLYAKIS 555
           RLL T   ++K   GNR++ S  ++ K++
Sbjct: 146 RLLITLHHIIKAMAGNRLLRSRQIFYKLA 174


>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 462

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -2

Query: 226 PHNVLYKCSISPEPNSCSKGNMDPQRAQNA 137
           P N L K +I+ EPN+ +K N+D  +A +A
Sbjct: 423 PQN-LAKNNINSEPNTPTKSNIDTGKAHSA 451


>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -2

Query: 706 IFKTWFLRLISIEFTV*KLSFQEMELKLRTSYMVINFN 593
           + K W  +++S  F    L+FQ+ME++ R S   I FN
Sbjct: 541 LVKLWVEKIVS--FIEQFLNFQDMEIQRRASEFYILFN 576


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,036,649
Number of Sequences: 5004
Number of extensions: 60067
Number of successful extensions: 140
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)