Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_I22
(893 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0889 + 28543106-28543354,28544379-28544465,28544548-285446... 57 2e-08
07_01_0873 - 7257016-7257957,7260083-7260262 46 5e-05
03_06_0445 - 33982018-33982965,33984308-33984463 46 5e-05
02_05_0276 + 27378994-27380094,27380185-27380250,27380586-273806... 33 0.23
07_03_0724 + 20975942-20976867,20977397-20977476,20977976-209783... 29 3.8
05_06_0124 - 25822176-25822633,25822738-25825420 29 5.0
02_05_0097 + 25796725-25796857,25797366-25797495,25798273-257988... 29 5.0
10_08_0959 - 21813756-21814097,21814462-21814570,21814688-218147... 29 6.6
03_02_0896 - 12233706-12233801,12234005-12234181,12234741-122348... 28 8.7
01_06_0900 - 32841880-32842078,32842179-32842300,32842621-328428... 28 8.7
>03_05_0889 +
28543106-28543354,28544379-28544465,28544548-28544604,
28544704-28544781
Length = 156
Score = 56.8 bits (131), Expect = 2e-08
Identities = 24/47 (51%), Positives = 30/47 (63%)
Frame = +1
Query: 322 EGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETEN 462
E V ++C KC + Y T QLRSADEGQTVFY C C+++ EN
Sbjct: 109 ERATVNKECEKCKNPELQYYTKQLRSADEGQTVFYKCANCRHEFNEN 155
>07_01_0873 - 7257016-7257957,7260083-7260262
Length = 373
Score = 45.6 bits (103), Expect = 5e-05
Identities = 18/41 (43%), Positives = 24/41 (58%)
Frame = +1
Query: 319 PEGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 441
P+ + KC +CG + +Y LQ RSADE T F TC+ C
Sbjct: 326 PKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNC 366
>03_06_0445 - 33982018-33982965,33984308-33984463
Length = 367
Score = 45.6 bits (103), Expect = 5e-05
Identities = 18/41 (43%), Positives = 24/41 (58%)
Frame = +1
Query: 319 PEGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 441
P+ + KC +CG + +Y LQ RSADE T F TC+ C
Sbjct: 320 PKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNC 360
>02_05_0276 +
27378994-27380094,27380185-27380250,27380586-27380660,
27381927-27382025,27382353-27382436,27382519-27382868,
27383190-27383406,27383579-27383658,27383760-27383850,
27386544-27386672,27388771-27388858,27389967-27390097
Length = 836
Score = 33.5 bits (73), Expect = 0.23
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +1
Query: 328 PVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIK--CKYKETEN 462
P C +C Y +Q+RSADE + FY C + C++ E+
Sbjct: 790 PKTTTTCPRCQNGEAYYRQMQIRSADEPMSTFYKCCREECQFDWRED 836
>07_03_0724 +
20975942-20976867,20977397-20977476,20977976-20978370,
20988410-20989444
Length = 811
Score = 29.5 bits (63), Expect = 3.8
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = -1
Query: 359 PHLA-HFLSTTGPSGPSVCSIFSFV 288
PH+A HF + TG P VC FSF+
Sbjct: 504 PHMARHFTNATGRGMPLVCPTFSFL 528
>05_06_0124 - 25822176-25822633,25822738-25825420
Length = 1046
Score = 29.1 bits (62), Expect = 5.0
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -3
Query: 177 VARVIWTHSEHKTLYLVDNGHFTWTLFPKYLHIRXTRXNXH 55
V +WT + T+ L +NGH T +L P+ L+ TR H
Sbjct: 432 VPAALWTETRLITVLLQNNGHLTGSL-PEKLYWNLTRLYIH 471
>02_05_0097 +
25796725-25796857,25797366-25797495,25798273-25798842,
25799604-25799650,25799908-25799976,25801437-25801699
Length = 403
Score = 29.1 bits (62), Expect = 5.0
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Frame = -3
Query: 162 WTHSEHKTL--YLVDNGHFTWTLFPK 91
WT E K L Y+ NGH +W L PK
Sbjct: 17 WTPEEDKLLVDYIQANGHGSWRLLPK 42
>10_08_0959 - 21813756-21814097,21814462-21814570,21814688-21814740,
21814849-21815049,21815320-21815433,21815513-21815671,
21816490-21816849,21816928-21817149,21817967-21818093,
21818887-21819023,21819169-21819292,21819665-21820174,
21820255-21820436,21820812-21820862,21821114-21821266,
21821339-21821437,21821519-21821861,21821957-21822030,
21822105-21823025,21823133-21823257,21823419-21823461,
21823574-21823762,21824814-21825074,21825228-21825387,
21826200-21826363,21826523-21827009,21827090-21827431,
21827519-21827836,21828001-21828041,21828136-21828388,
21829158-21829261,21830198-21830386,21830543-21831196,
21831320-21831610,21831739-21831882,21832107-21832205,
21832549-21832657,21832739-21832923,21833008-21833121,
21833270-21833401,21833483-21833815,21833945-21834436,
21834773-21834847,21834917-21835066,21835143-21835241,
21835463-21835547,21837188-21837375,21837513-21837647,
21837729-21837849,21838127-21838194,21838275-21838370,
21838450-21838554,21838665-21838980,21839053-21839142,
21840011-21840181,21840850-21841010,21841088-21841270,
21841839-21841940,21842515-21842632,21842704-21842798,
21842972-21843022,21843107-21843241,21843333-21843436,
21844249-21844414,21844649-21844773,21845220-21845316
Length = 4181
Score = 28.7 bits (61), Expect = 6.6
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -2
Query: 256 IEISFYYNYQPHNVLYKCSISPEPNSCSKGNMDP 155
+ +S+Y H VL + E SCS+G ++P
Sbjct: 3001 LSLSYYLPISAHYVLSASHLDEEDTSCSQGTLNP 3034
>03_02_0896 -
12233706-12233801,12234005-12234181,12234741-12234854,
12234928-12235006,12235372-12235533,12235957-12236079,
12236139-12236218
Length = 276
Score = 28.3 bits (60), Expect = 8.7
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = -2
Query: 265 VLCIEISFYYNYQPHNVLYKCSISPEPNSCSKGNMDPQRAQNAVSS 128
V C+E ++ Y Y P ++L C I E ++ S +DP + +++
Sbjct: 6 VACLEDNYAYLYPPESILVSCLIVDE-STKSAAAVDPVEPEKVLAA 50
>01_06_0900 -
32841880-32842078,32842179-32842300,32842621-32842841,
32843086-32843224,32843350-32843576,32843677-32843788,
32843863-32844063,32845349-32845525
Length = 465
Score = 28.3 bits (60), Expect = 8.7
Identities = 11/54 (20%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -2
Query: 757 WTNVYNFNYSDLILLHVIFKTWFLRL-ISIEFTV*KLSFQEMELKLRTSYMVIN 599
W N YN++Y + + V+++ WF++ + + F +++ +Y ++N
Sbjct: 318 WYNSYNYHYMEGESMRVMYEPWFVKYKVDLVFAGHVHAYERTHRISNVAYNIVN 371
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,825,318
Number of Sequences: 37544
Number of extensions: 320087
Number of successful extensions: 663
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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