Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_I22
(893 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE014297-3039|AAF55918.1| 120|Drosophila melanogaster CG13418-P... 122 7e-28
X53670-1|CAA37710.1| 313|Drosophila melanogaster protein ( Dros... 38 0.014
L26091-1|AAA92864.2| 313|Drosophila melanogaster transcription ... 38 0.014
AY051843-1|AAK93267.1| 313|Drosophila melanogaster LD34766p pro... 38 0.014
AE014134-2559|AAF53436.1| 313|Drosophila melanogaster CG3710-PA... 38 0.014
AE013599-3053|AAM68394.2| 108|Drosophila melanogaster CG33785-P... 37 0.032
S88139-1|AAB21674.1| 129|Drosophila melanogaster RNA polymerase... 30 3.7
BT023902-1|ABA81836.1| 390|Drosophila melanogaster IP14766p pro... 30 4.9
AE014134-2275|AAF53240.2| 2171|Drosophila melanogaster CG9932-PA... 30 4.9
AY061244-1|AAL28792.1| 664|Drosophila melanogaster LD18373p pro... 29 6.5
AE014298-1641|AAF48061.1| 664|Drosophila melanogaster CG11696-P... 29 6.5
>AE014297-3039|AAF55918.1| 120|Drosophila melanogaster CG13418-PA
protein.
Length = 120
Score = 122 bits (294), Expect = 7e-28
Identities = 59/111 (53%), Positives = 75/111 (67%), Gaps = 3/111 (2%)
Frame = +1
Query: 142 FVLAVGPYYPCYKSLAPVKCYTCKAHYEADNYSKMKFQYTIHFNTI--SVITNENILHTD 315
F + G P + V CY CK ++ D YS K ++TIHFNT S + N ++
Sbjct: 10 FCPSCGSILPELQVKGNVICYNCKKEFQPDVYSGEKSEFTIHFNTYDPSKVFNRTKRESE 69
Query: 316 GP-EGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETENS 465
+GPVVERKC KC +D+MSYATLQLRSADEGQTVF+TC+KCK+KE+ENS
Sbjct: 70 SDADGPVVERKCPKCNHDKMSYATLQLRSADEGQTVFFTCLKCKFKESENS 120
>X53670-1|CAA37710.1| 313|Drosophila melanogaster protein (
Drosophila gene forRNA polymerase II elongation factor
DmS-II. ).
Length = 313
Score = 38.3 bits (85), Expect = 0.014
Identities = 17/33 (51%), Positives = 19/33 (57%)
Frame = +1
Query: 343 KCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 441
KCAKC +Y LQ RSADE T F C +C
Sbjct: 274 KCAKCKKRNCTYNQLQTRSADEPMTTFVMCNEC 306
>L26091-1|AAA92864.2| 313|Drosophila melanogaster transcription
elongation factor protein.
Length = 313
Score = 38.3 bits (85), Expect = 0.014
Identities = 17/33 (51%), Positives = 19/33 (57%)
Frame = +1
Query: 343 KCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 441
KCAKC +Y LQ RSADE T F C +C
Sbjct: 274 KCAKCKKRNCTYNQLQTRSADEPMTTFVMCNEC 306
>AY051843-1|AAK93267.1| 313|Drosophila melanogaster LD34766p
protein.
Length = 313
Score = 38.3 bits (85), Expect = 0.014
Identities = 17/33 (51%), Positives = 19/33 (57%)
Frame = +1
Query: 343 KCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 441
KCAKC +Y LQ RSADE T F C +C
Sbjct: 274 KCAKCKKRNCTYNQLQTRSADEPMTTFVMCNEC 306
>AE014134-2559|AAF53436.1| 313|Drosophila melanogaster CG3710-PA
protein.
Length = 313
Score = 38.3 bits (85), Expect = 0.014
Identities = 17/33 (51%), Positives = 19/33 (57%)
Frame = +1
Query: 343 KCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 441
KCAKC +Y LQ RSADE T F C +C
Sbjct: 274 KCAKCKKRNCTYNQLQTRSADEPMTTFVMCNEC 306
>AE013599-3053|AAM68394.2| 108|Drosophila melanogaster CG33785-PA,
isoform A protein.
Length = 108
Score = 37.1 bits (82), Expect = 0.032
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +1
Query: 337 ERKCAKCGYDRMSYATLQLRSADEGQTVFYTC 432
+ +C CG+ R + +Q RSADE T FY C
Sbjct: 66 DAECPTCGHKRAYFMQIQTRSADEPMTTFYKC 97
>S88139-1|AAB21674.1| 129|Drosophila melanogaster RNA polymerase II
15-kda subunit protein.
Length = 129
Score = 30.3 bits (65), Expect = 3.7
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +1
Query: 307 HTDGPEGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETENS 465
HT+GP G V R C +C + M Y + E + + Y C C YK+ NS
Sbjct: 9 HTEGP-GFVGIRFCQEC--NNMLYP----KEDKENKILLYACRNCDYKQKTNS 54
>BT023902-1|ABA81836.1| 390|Drosophila melanogaster IP14766p
protein.
Length = 390
Score = 29.9 bits (64), Expect = 4.9
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Frame = +1
Query: 343 KCAKCGYDRMSYATLQLRS---ADEGQTVFYTCIKCKY 447
KC+ C + + Y T QLR+ A+ G+T F+ C KC Y
Sbjct: 208 KCSACEFTTL-YRT-QLRAHELAEHGKTKFFRCDKCSY 243
>AE014134-2275|AAF53240.2| 2171|Drosophila melanogaster CG9932-PA
protein.
Length = 2171
Score = 29.9 bits (64), Expect = 4.9
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Frame = +1
Query: 343 KCAKCGYDRMSYATLQLRS---ADEGQTVFYTCIKCKY 447
KC+ C + + Y T QLR+ A+ G+T F+ C KC Y
Sbjct: 309 KCSACEFTTL-YRT-QLRAHELAEHGKTKFFRCDKCSY 344
>AY061244-1|AAL28792.1| 664|Drosophila melanogaster LD18373p
protein.
Length = 664
Score = 29.5 bits (63), Expect = 6.5
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Frame = +1
Query: 265 HFNT-ISVITNENILHTDGPEGPVVERKCAKCG---YDRMSYATLQLRSADEGQTVFYTC 432
HF + + + ++ LH P+GPV E +C CG D S R D Y C
Sbjct: 453 HFRSKANFLIHKKALH---PDGPVAEVQCTLCGRWLRDERSLRKHLARHDDRDGDTKYRC 509
Query: 433 IKCKYKETENS 465
+ C +++ +
Sbjct: 510 LLCNAEKSSRA 520
>AE014298-1641|AAF48061.1| 664|Drosophila melanogaster CG11696-PA
protein.
Length = 664
Score = 29.5 bits (63), Expect = 6.5
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Frame = +1
Query: 265 HFNT-ISVITNENILHTDGPEGPVVERKCAKCG---YDRMSYATLQLRSADEGQTVFYTC 432
HF + + + ++ LH P+GPV E +C CG D S R D Y C
Sbjct: 453 HFRSKANFLIHKKALH---PDGPVAEVQCTLCGRWLRDERSLRKHLARHDDRDGDTKYRC 509
Query: 433 IKCKYKETENS 465
+ C +++ +
Sbjct: 510 LLCNAEKSSRA 520
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,477,973
Number of Sequences: 53049
Number of extensions: 611006
Number of successful extensions: 1290
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1287
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4341591036
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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