Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_I21
(917 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC096223-1|AAH96223.1| 418|Homo sapiens synovial sarcoma transl... 42 0.004
BC096222-1|AAH96222.1| 418|Homo sapiens synovial sarcoma transl... 42 0.004
AF343880-1|AAK21314.1| 422|Homo sapiens SYT variant 1 protein. 42 0.004
AF244972-1|AAM00188.1| 414|Homo sapiens SYT protein protein. 42 0.004
AF230662-1|AAF79937.1| 492|Homo sapiens unknown protein. 42 0.004
AB300356-1|BAF56183.1| 488|Homo sapiens fusion protein SYT-SSX2... 42 0.004
AB300354-1|BAF56181.1| 488|Homo sapiens fusion protein SYT-SSX1... 42 0.004
AF257500-1|AAG31034.1| 492|Homo sapiens SYT/SSX4 fusion protein... 41 0.005
X79201-1|CAA55792.1| 391|Homo sapiens SYT protein. 38 0.039
CR542103-1|CAG46900.1| 391|Homo sapiens SS18 protein. 38 0.039
CR542088-1|CAG46885.1| 391|Homo sapiens SS18 protein. 38 0.039
BC096224-1|AAH96224.1| 387|Homo sapiens synovial sarcoma transl... 38 0.039
BC096221-1|AAH96221.1| 387|Homo sapiens synovial sarcoma transl... 38 0.039
AB300357-1|BAF56184.1| 457|Homo sapiens fusion protein SYT-SSX2... 38 0.039
AB300355-1|BAF56182.1| 457|Homo sapiens fusion protein SYT-SSX1... 38 0.039
AF257501-1|AAG31035.1| 369|Homo sapiens SYT/SSX4v fusion protei... 38 0.067
DQ120650-1|ABB92435.1| 384|Homo sapiens RBM1 protein. 36 0.21
BC012942-1|AAH12942.1| 390|Homo sapiens RNA binding motif prote... 36 0.21
AL139416-2|CAI21693.1| 390|Homo sapiens RNA binding motif prote... 36 0.21
Z23064-1|CAA80599.1| 391|Homo sapiens hnRNP G protein protein. 35 0.36
U09123-1|AAB60650.1| 341|Homo sapiens hnRNP protein A2 protein. 35 0.48
M29065-1|AAA36574.1| 341|Homo sapiens protein ( Human hnRNP A2 ... 35 0.48
M29064-1|AAA60271.1| 353|Homo sapiens SNRPB1 protein. 35 0.48
D28877-2|BAA06032.1| 341|Homo sapiens hnRNP A2 protein protein. 35 0.48
D28877-1|BAA06031.1| 353|Homo sapiens hnRNP B1 protein protein. 35 0.48
U76713-1|AAC50956.1| 331|Homo sapiens ABBP-1 protein. 34 0.63
BC036708-1|AAH36708.1| 332|Homo sapiens heterogeneous nuclear r... 34 0.63
AK097657-1|BAC05134.1| 332|Homo sapiens protein ( Homo sapiens ... 34 0.63
BC007435-1|AAH07435.1| 391|Homo sapiens RNA binding motif prote... 34 0.83
BC006550-1|AAH06550.1| 391|Homo sapiens RNA binding motif prote... 34 0.83
AY464692-1|AAR28036.1| 391|Homo sapiens heterogeneous nuclear r... 34 0.83
AL683813-6|CAI39448.1| 391|Homo sapiens RNA binding motif prote... 34 0.83
AK096015-1|BAC04674.1| 378|Homo sapiens protein ( Homo sapiens ... 34 0.83
AF266723-1|AAK58567.1| 391|Homo sapiens RBMX protein. 34 0.83
X98893-1|CAA67398.1| 589|Homo sapiens hTAFII68 protein. 33 1.1
U51334-1|AAC50932.1| 592|Homo sapiens putative RNA binding prot... 33 1.1
BC046099-1|AAH46099.2| 592|Homo sapiens TAF15 RNA polymerase II... 33 1.1
AY197697-1|AAO13485.1| 589|Homo sapiens TAF15 RNA polymerase II... 33 1.1
AK223425-1|BAD97145.1| 332|Homo sapiens heterogeneous nuclear r... 33 1.1
AB010067-2|BAA33812.1| 589|Homo sapiens RBP56/hTAFII68 protein. 33 1.1
AB010067-1|BAA33811.1| 592|Homo sapiens RBP56/hTAFII68 protein. 33 1.1
Z97056-3|CAB09792.1| 650|Homo sapiens DEAD (Asp-Glu-Ala-Asp) bo... 31 5.9
U59321-1|AAC50787.1| 650|Homo sapiens DEAD-box protein p72 prot... 31 5.9
CR456432-1|CAG30318.1| 652|Homo sapiens DDX17 protein. 31 5.9
BX322635-2|CAI42531.1| 693|Homo sapiens TSPY-like 2 protein. 31 5.9
BC024270-1|AAH24270.1| 693|Homo sapiens TSPY-like 2 protein. 31 5.9
BC001566-1|AAH01566.1| 338|Homo sapiens TSPYL2 protein protein. 31 5.9
BC000595-1|AAH00595.2| 729|Homo sapiens DEAD (Asp-Glu-Ala-Asp) ... 31 5.9
AY040871-1|AAK72407.1| 693|Homo sapiens cell division autoantig... 31 5.9
AF273046-1|AAG34906.1| 693|Homo sapiens CTCL tumor antigen se20... 31 5.9
AF254794-1|AAG53596.1| 633|Homo sapiens differentially expresse... 31 5.9
AB209595-1|BAD92832.1| 737|Homo sapiens DEAD box polypeptide 17... 31 5.9
AB209182-1|BAD92419.1| 334|Homo sapiens TSPY-like 2 variant pro... 31 5.9
AB015345-1|BAA34802.1| 486|Homo sapiens HRIHFB2216 protein. 31 5.9
X52104-1|CAA36324.1| 614|Homo sapiens protein ( Human mRNA for ... 31 7.7
X15729-1|CAA33751.1| 614|Homo sapiens protein ( Human mRNA for ... 31 7.7
BX571764-1|CAE11890.1| 406|Homo sapiens hypothetical protein pr... 31 7.7
BT006943-1|AAP35589.1| 614|Homo sapiens DEAD/H (Asp-Glu-Ala-Asp... 31 7.7
BC016027-1|AAH16027.1| 614|Homo sapiens DEAD (Asp-Glu-Ala-Asp) ... 31 7.7
AF015812-1|AAB84094.1| 614|Homo sapiens RNA helicase p68 protein. 31 7.7
AB209919-1|BAD93156.1| 457|Homo sapiens Hypothetical protein DK... 31 7.7
>BC096223-1|AAH96223.1| 418|Homo sapiens synovial sarcoma
translocation, chromosome 18 protein.
Length = 418
Score = 41.5 bits (93), Expect = 0.004
Identities = 37/126 (29%), Positives = 49/126 (38%), Gaps = 12/126 (9%)
Frame = +3
Query: 324 NFGPRPNM-MNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQ----- 485
N+GPRPNM M N P YN G Q+ G N GN
Sbjct: 189 NYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQR 248
Query: 486 --PPKKNNFNGDKSPGNMQ---YGNKNDFGGP-KQQNYNKNYGPKTYNNQNCYGNEQPEF 647
PP + G + Q YG++ GG + N+ Y P +N+ YG +QP +
Sbjct: 249 QIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHND---YGYQQPSY 305
Query: 648 IPRQSY 665
P Q Y
Sbjct: 306 -PEQGY 310
>BC096222-1|AAH96222.1| 418|Homo sapiens synovial sarcoma
translocation, chromosome 18 protein.
Length = 418
Score = 41.5 bits (93), Expect = 0.004
Identities = 37/126 (29%), Positives = 49/126 (38%), Gaps = 12/126 (9%)
Frame = +3
Query: 324 NFGPRPNM-MNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQ----- 485
N+GPRPNM M N P YN G Q+ G N GN
Sbjct: 189 NYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQR 248
Query: 486 --PPKKNNFNGDKSPGNMQ---YGNKNDFGGP-KQQNYNKNYGPKTYNNQNCYGNEQPEF 647
PP + G + Q YG++ GG + N+ Y P +N+ YG +QP +
Sbjct: 249 QIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHND---YGYQQPSY 305
Query: 648 IPRQSY 665
P Q Y
Sbjct: 306 -PEQGY 310
>AF343880-1|AAK21314.1| 422|Homo sapiens SYT variant 1 protein.
Length = 422
Score = 41.5 bits (93), Expect = 0.004
Identities = 37/126 (29%), Positives = 49/126 (38%), Gaps = 12/126 (9%)
Frame = +3
Query: 324 NFGPRPNM-MNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQ----- 485
N+GPRPNM M N P YN G Q+ G N GN
Sbjct: 193 NYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQR 252
Query: 486 --PPKKNNFNGDKSPGNMQ---YGNKNDFGGP-KQQNYNKNYGPKTYNNQNCYGNEQPEF 647
PP + G + Q YG++ GG + N+ Y P +N+ YG +QP +
Sbjct: 253 QIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHND---YGYQQPSY 309
Query: 648 IPRQSY 665
P Q Y
Sbjct: 310 -PEQGY 314
>AF244972-1|AAM00188.1| 414|Homo sapiens SYT protein protein.
Length = 414
Score = 41.5 bits (93), Expect = 0.004
Identities = 37/126 (29%), Positives = 49/126 (38%), Gaps = 12/126 (9%)
Frame = +3
Query: 324 NFGPRPNM-MNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQ----- 485
N+GPRPNM M N P YN G Q+ G N GN
Sbjct: 193 NYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQR 252
Query: 486 --PPKKNNFNGDKSPGNMQ---YGNKNDFGGP-KQQNYNKNYGPKTYNNQNCYGNEQPEF 647
PP + G + Q YG++ GG + N+ Y P +N+ YG +QP +
Sbjct: 253 QIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHND---YGYQQPSY 309
Query: 648 IPRQSY 665
P Q Y
Sbjct: 310 -PEQGY 314
>AF230662-1|AAF79937.1| 492|Homo sapiens unknown protein.
Length = 492
Score = 41.5 bits (93), Expect = 0.004
Identities = 37/126 (29%), Positives = 49/126 (38%), Gaps = 12/126 (9%)
Frame = +3
Query: 324 NFGPRPNM-MNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQ----- 485
N+GPRPNM M N P YN G Q+ G N GN
Sbjct: 193 NYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQR 252
Query: 486 --PPKKNNFNGDKSPGNMQ---YGNKNDFGGP-KQQNYNKNYGPKTYNNQNCYGNEQPEF 647
PP + G + Q YG++ GG + N+ Y P +N+ YG +QP +
Sbjct: 253 QIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHND---YGYQQPSY 309
Query: 648 IPRQSY 665
P Q Y
Sbjct: 310 -PEQGY 314
>AB300356-1|BAF56183.1| 488|Homo sapiens fusion protein SYT-SSX2
protein.
Length = 488
Score = 41.5 bits (93), Expect = 0.004
Identities = 37/126 (29%), Positives = 49/126 (38%), Gaps = 12/126 (9%)
Frame = +3
Query: 324 NFGPRPNM-MNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQ----- 485
N+GPRPNM M N P YN G Q+ G N GN
Sbjct: 189 NYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQR 248
Query: 486 --PPKKNNFNGDKSPGNMQ---YGNKNDFGGP-KQQNYNKNYGPKTYNNQNCYGNEQPEF 647
PP + G + Q YG++ GG + N+ Y P +N+ YG +QP +
Sbjct: 249 QIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHND---YGYQQPSY 305
Query: 648 IPRQSY 665
P Q Y
Sbjct: 306 -PEQGY 310
>AB300354-1|BAF56181.1| 488|Homo sapiens fusion protein SYT-SSX1
protein.
Length = 488
Score = 41.5 bits (93), Expect = 0.004
Identities = 37/126 (29%), Positives = 49/126 (38%), Gaps = 12/126 (9%)
Frame = +3
Query: 324 NFGPRPNM-MNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQ----- 485
N+GPRPNM M N P YN G Q+ G N GN
Sbjct: 189 NYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQR 248
Query: 486 --PPKKNNFNGDKSPGNMQ---YGNKNDFGGP-KQQNYNKNYGPKTYNNQNCYGNEQPEF 647
PP + G + Q YG++ GG + N+ Y P +N+ YG +QP +
Sbjct: 249 QIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHND---YGYQQPSY 305
Query: 648 IPRQSY 665
P Q Y
Sbjct: 306 -PEQGY 310
>AF257500-1|AAG31034.1| 492|Homo sapiens SYT/SSX4 fusion protein
protein.
Length = 492
Score = 41.1 bits (92), Expect = 0.005
Identities = 37/126 (29%), Positives = 49/126 (38%), Gaps = 12/126 (9%)
Frame = +3
Query: 324 NFGPRPNM-MNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQ----- 485
N+GPRPNM M N P YN G Q+ G N GN
Sbjct: 193 NYGPRPNMSMQPNQGPMMRQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQR 252
Query: 486 --PPKKNNFNGDKSPGNMQ---YGNKNDFGGP-KQQNYNKNYGPKTYNNQNCYGNEQPEF 647
PP + G + Q YG++ GG + N+ Y P +N+ YG +QP +
Sbjct: 253 QIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHND---YGYQQPSY 309
Query: 648 IPRQSY 665
P Q Y
Sbjct: 310 -PEQGY 314
>X79201-1|CAA55792.1| 391|Homo sapiens SYT protein.
Length = 391
Score = 38.3 bits (85), Expect = 0.039
Identities = 39/136 (28%), Positives = 52/136 (38%), Gaps = 15/136 (11%)
Frame = +3
Query: 324 NFGPRPNM-MNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQ----- 485
N+GPRPNM M N P YN G Q+ G N GN
Sbjct: 193 NYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQR 252
Query: 486 --PPKKNNFNGDKSPGNMQ---YGNKNDFGGP-KQQNYNKNYGPKTYNNQNCYGNEQPEF 647
PP + G + Q YG++ GG + N+ Y P N+Q YG +Q +
Sbjct: 253 QIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDG-NSQ--YGQQQDAY 309
Query: 648 ---IPRQSYSPNSVQH 686
P+Q Y P Q+
Sbjct: 310 QGPPPQQGYPPQQQQY 325
>CR542103-1|CAG46900.1| 391|Homo sapiens SS18 protein.
Length = 391
Score = 38.3 bits (85), Expect = 0.039
Identities = 39/136 (28%), Positives = 52/136 (38%), Gaps = 15/136 (11%)
Frame = +3
Query: 324 NFGPRPNM-MNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQ----- 485
N+GPRPNM M N P YN G Q+ G N GN
Sbjct: 193 NYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQR 252
Query: 486 --PPKKNNFNGDKSPGNMQ---YGNKNDFGGP-KQQNYNKNYGPKTYNNQNCYGNEQPEF 647
PP + G + Q YG++ GG + N+ Y P N+Q YG +Q +
Sbjct: 253 QIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDG-NSQ--YGQQQDAY 309
Query: 648 ---IPRQSYSPNSVQH 686
P+Q Y P Q+
Sbjct: 310 QGPPPQQGYPPQQQQY 325
>CR542088-1|CAG46885.1| 391|Homo sapiens SS18 protein.
Length = 391
Score = 38.3 bits (85), Expect = 0.039
Identities = 39/136 (28%), Positives = 52/136 (38%), Gaps = 15/136 (11%)
Frame = +3
Query: 324 NFGPRPNM-MNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQ----- 485
N+GPRPNM M N P YN G Q+ G N GN
Sbjct: 193 NYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQR 252
Query: 486 --PPKKNNFNGDKSPGNMQ---YGNKNDFGGP-KQQNYNKNYGPKTYNNQNCYGNEQPEF 647
PP + G + Q YG++ GG + N+ Y P N+Q YG +Q +
Sbjct: 253 QIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDG-NSQ--YGQQQDAY 309
Query: 648 ---IPRQSYSPNSVQH 686
P+Q Y P Q+
Sbjct: 310 QGPPPQQGYPPQQQQY 325
>BC096224-1|AAH96224.1| 387|Homo sapiens synovial sarcoma
translocation, chromosome 18 protein.
Length = 387
Score = 38.3 bits (85), Expect = 0.039
Identities = 39/136 (28%), Positives = 52/136 (38%), Gaps = 15/136 (11%)
Frame = +3
Query: 324 NFGPRPNM-MNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQ----- 485
N+GPRPNM M N P YN G Q+ G N GN
Sbjct: 189 NYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQR 248
Query: 486 --PPKKNNFNGDKSPGNMQ---YGNKNDFGGP-KQQNYNKNYGPKTYNNQNCYGNEQPEF 647
PP + G + Q YG++ GG + N+ Y P N+Q YG +Q +
Sbjct: 249 QIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDG-NSQ--YGQQQDAY 305
Query: 648 ---IPRQSYSPNSVQH 686
P+Q Y P Q+
Sbjct: 306 QGPPPQQGYPPQQQQY 321
>BC096221-1|AAH96221.1| 387|Homo sapiens synovial sarcoma
translocation, chromosome 18 protein.
Length = 387
Score = 38.3 bits (85), Expect = 0.039
Identities = 39/136 (28%), Positives = 52/136 (38%), Gaps = 15/136 (11%)
Frame = +3
Query: 324 NFGPRPNM-MNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQ----- 485
N+GPRPNM M N P YN G Q+ G N GN
Sbjct: 189 NYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQR 248
Query: 486 --PPKKNNFNGDKSPGNMQ---YGNKNDFGGP-KQQNYNKNYGPKTYNNQNCYGNEQPEF 647
PP + G + Q YG++ GG + N+ Y P N+Q YG +Q +
Sbjct: 249 QIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDG-NSQ--YGQQQDAY 305
Query: 648 ---IPRQSYSPNSVQH 686
P+Q Y P Q+
Sbjct: 306 QGPPPQQGYPPQQQQY 321
>AB300357-1|BAF56184.1| 457|Homo sapiens fusion protein SYT-SSX2
protein.
Length = 457
Score = 38.3 bits (85), Expect = 0.039
Identities = 39/136 (28%), Positives = 52/136 (38%), Gaps = 15/136 (11%)
Frame = +3
Query: 324 NFGPRPNM-MNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQ----- 485
N+GPRPNM M N P YN G Q+ G N GN
Sbjct: 189 NYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQR 248
Query: 486 --PPKKNNFNGDKSPGNMQ---YGNKNDFGGP-KQQNYNKNYGPKTYNNQNCYGNEQPEF 647
PP + G + Q YG++ GG + N+ Y P N+Q YG +Q +
Sbjct: 249 QIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDG-NSQ--YGQQQDAY 305
Query: 648 ---IPRQSYSPNSVQH 686
P+Q Y P Q+
Sbjct: 306 QGPPPQQGYPPQQQQY 321
>AB300355-1|BAF56182.1| 457|Homo sapiens fusion protein SYT-SSX1
protein.
Length = 457
Score = 38.3 bits (85), Expect = 0.039
Identities = 39/136 (28%), Positives = 52/136 (38%), Gaps = 15/136 (11%)
Frame = +3
Query: 324 NFGPRPNM-MNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQ----- 485
N+GPRPNM M N P YN G Q+ G N GN
Sbjct: 189 NYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQR 248
Query: 486 --PPKKNNFNGDKSPGNMQ---YGNKNDFGGP-KQQNYNKNYGPKTYNNQNCYGNEQPEF 647
PP + G + Q YG++ GG + N+ Y P N+Q YG +Q +
Sbjct: 249 QIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDG-NSQ--YGQQQDAY 305
Query: 648 ---IPRQSYSPNSVQH 686
P+Q Y P Q+
Sbjct: 306 QGPPPQQGYPPQQQQY 321
>AF257501-1|AAG31035.1| 369|Homo sapiens SYT/SSX4v fusion protein
protein.
Length = 369
Score = 37.5 bits (83), Expect = 0.067
Identities = 39/136 (28%), Positives = 52/136 (38%), Gaps = 15/136 (11%)
Frame = +3
Query: 324 NFGPRPNM-MNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQ----- 485
N+GPRPNM M N P Y+ G Q+ G N GN
Sbjct: 165 NYGPRPNMSMQPNQGPMMHQQPPSQQYDMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQR 224
Query: 486 --PPKKNNFNGDKSPGNMQ---YGNKNDFGGP-KQQNYNKNYGPKTYNNQNCYGNEQPEF 647
PP + G + Q YG++ GG + N+ Y P N+Q YG +Q F
Sbjct: 225 QIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDG-NSQ--YGQQQDAF 281
Query: 648 ---IPRQSYSPNSVQH 686
P+Q Y P Q+
Sbjct: 282 QGPPPQQGYPPQQQQY 297
>DQ120650-1|ABB92435.1| 384|Homo sapiens RBM1 protein.
Length = 384
Score = 35.9 bits (79), Expect = 0.21
Identities = 26/118 (22%), Positives = 52/118 (44%), Gaps = 5/118 (4%)
Frame = +3
Query: 276 GKIPYIKGLPDFGGPKNFGPRPNMMNKNFRPRNDFNEVKNDYNTKNDGNQNDFGG----P 443
G+ P +G +GGP P P+ + PR+D K+ Y++++ + D P
Sbjct: 179 GRAPLSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPP 238
Query: 444 KQFRPRNNFNNGNQPPKKNNFNGDKSPGNMQYGNKNDFGG-PKQQNYNKNYGPKTYNN 614
+ + R+ ++ ++ + GD+ YG D+ P +Y +Y ++Y N
Sbjct: 239 RDYTYRDYGHSSSRDDYPSRGYGDRD----GYGRDRDYSDHPSGGSYRDSY--ESYGN 290
>BC012942-1|AAH12942.1| 390|Homo sapiens RNA binding motif protein,
X-linked-like 1 protein.
Length = 390
Score = 35.9 bits (79), Expect = 0.21
Identities = 26/118 (22%), Positives = 52/118 (44%), Gaps = 5/118 (4%)
Frame = +3
Query: 276 GKIPYIKGLPDFGGPKNFGPRPNMMNKNFRPRNDFNEVKNDYNTKNDGNQNDFGG----P 443
G+ P +G +GGP P P+ + PR+D K+ Y++++ + D P
Sbjct: 179 GRAPLSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPP 238
Query: 444 KQFRPRNNFNNGNQPPKKNNFNGDKSPGNMQYGNKNDFGG-PKQQNYNKNYGPKTYNN 614
+ + R+ ++ ++ + GD+ YG D+ P +Y +Y ++Y N
Sbjct: 239 RDYTYRDYGHSSSRDDYPSRGYGDRD----GYGRDRDYSDHPSGGSYRDSY--ESYGN 290
>AL139416-2|CAI21693.1| 390|Homo sapiens RNA binding motif protein,
X-linked-like 1 protein.
Length = 390
Score = 35.9 bits (79), Expect = 0.21
Identities = 26/118 (22%), Positives = 52/118 (44%), Gaps = 5/118 (4%)
Frame = +3
Query: 276 GKIPYIKGLPDFGGPKNFGPRPNMMNKNFRPRNDFNEVKNDYNTKNDGNQNDFGG----P 443
G+ P +G +GGP P P+ + PR+D K+ Y++++ + D P
Sbjct: 179 GRAPLSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPP 238
Query: 444 KQFRPRNNFNNGNQPPKKNNFNGDKSPGNMQYGNKNDFGG-PKQQNYNKNYGPKTYNN 614
+ + R+ ++ ++ + GD+ YG D+ P +Y +Y ++Y N
Sbjct: 239 RDYTYRDYGHSSSRDDYPSRGYGDRD----GYGRDRDYSDHPSGGSYRDSY--ESYGN 290
>Z23064-1|CAA80599.1| 391|Homo sapiens hnRNP G protein protein.
Length = 391
Score = 35.1 bits (77), Expect = 0.36
Identities = 30/139 (21%), Positives = 58/139 (41%), Gaps = 5/139 (3%)
Frame = +3
Query: 276 GKIPYIKGLPDFGGPKNFGPRPNMMNKNFRPRNDFNEVKNDYNTK---NDGNQNDFGGPK 446
G+ P +G +GGP P P+ + PR+D K+ Y+++ + + D+ P
Sbjct: 179 GRAPVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPP- 237
Query: 447 QFRPRN-NFNNGNQPPKKNNFNGDKSPGNMQYGNKNDFGG-PKQQNYNKNYGPKTYNNQN 620
PR+ + + ++++ + YG D+ P +Y +Y ++Y N
Sbjct: 238 ---PRDYTYRDYGHSSSRDDYPSREYSDRDGYGRDRDYSDHPSGGSYRDSY--ESYGNSR 292
Query: 621 CYGNEQPEFIPRQSYSPNS 677
+ P P SY +S
Sbjct: 293 ---SAPPTRGPPPSYGGSS 308
>U09123-1|AAB60650.1| 341|Homo sapiens hnRNP protein A2 protein.
Length = 341
Score = 34.7 bits (76), Expect = 0.48
Identities = 35/118 (29%), Positives = 42/118 (35%), Gaps = 1/118 (0%)
Frame = +3
Query: 312 GGPKNFGPRPNMMNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQPP 491
GG NFGP P NFR +D + DG GGP NF P
Sbjct: 202 GGGGNFGPGPG---SNFRGGSDGYGSGRGFG---DGYNGYGGGPGG----GNFGGS---P 248
Query: 492 KKNNFNGDKSPGNMQYGNKNDFGGPKQQNYNK-NYGPKTYNNQNCYGNEQPEFIPRQS 662
G G YGN+ G NY NYG YN+ Y + + P +S
Sbjct: 249 GYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKS 306
>M29065-1|AAA36574.1| 341|Homo sapiens protein ( Human hnRNP A2
protein mRNA. ).
Length = 341
Score = 34.7 bits (76), Expect = 0.48
Identities = 35/118 (29%), Positives = 42/118 (35%), Gaps = 1/118 (0%)
Frame = +3
Query: 312 GGPKNFGPRPNMMNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQPP 491
GG NFGP P NFR +D + DG GGP NF P
Sbjct: 202 GGGGNFGPGPG---SNFRGGSDGYGSGRGFG---DGYNGYGGGPGG----GNFGGS---P 248
Query: 492 KKNNFNGDKSPGNMQYGNKNDFGGPKQQNYNK-NYGPKTYNNQNCYGNEQPEFIPRQS 662
G G YGN+ G NY NYG YN+ Y + + P +S
Sbjct: 249 GYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKS 306
>M29064-1|AAA60271.1| 353|Homo sapiens SNRPB1 protein.
Length = 353
Score = 34.7 bits (76), Expect = 0.48
Identities = 35/118 (29%), Positives = 42/118 (35%), Gaps = 1/118 (0%)
Frame = +3
Query: 312 GGPKNFGPRPNMMNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQPP 491
GG NFGP P NFR +D + DG GGP NF P
Sbjct: 214 GGGGNFGPGPG---SNFRGGSDGYGSGRGFG---DGYNGYGGGPGG----GNFGGS---P 260
Query: 492 KKNNFNGDKSPGNMQYGNKNDFGGPKQQNYNK-NYGPKTYNNQNCYGNEQPEFIPRQS 662
G G YGN+ G NY NYG YN+ Y + + P +S
Sbjct: 261 GYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKS 318
>D28877-2|BAA06032.1| 341|Homo sapiens hnRNP A2 protein protein.
Length = 341
Score = 34.7 bits (76), Expect = 0.48
Identities = 35/118 (29%), Positives = 42/118 (35%), Gaps = 1/118 (0%)
Frame = +3
Query: 312 GGPKNFGPRPNMMNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQPP 491
GG NFGP P NFR +D + DG GGP NF P
Sbjct: 202 GGGGNFGPGPG---SNFRGGSDGYGSGRGFG---DGYNGYGGGPGG----GNFGGS---P 248
Query: 492 KKNNFNGDKSPGNMQYGNKNDFGGPKQQNYNK-NYGPKTYNNQNCYGNEQPEFIPRQS 662
G G YGN+ G NY NYG YN+ Y + + P +S
Sbjct: 249 GYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKS 306
>D28877-1|BAA06031.1| 353|Homo sapiens hnRNP B1 protein protein.
Length = 353
Score = 34.7 bits (76), Expect = 0.48
Identities = 35/118 (29%), Positives = 42/118 (35%), Gaps = 1/118 (0%)
Frame = +3
Query: 312 GGPKNFGPRPNMMNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQPP 491
GG NFGP P NFR +D + DG GGP NF P
Sbjct: 214 GGGGNFGPGPG---SNFRGGSDGYGSGRGFG---DGYNGYGGGPGG----GNFGGS---P 260
Query: 492 KKNNFNGDKSPGNMQYGNKNDFGGPKQQNYNK-NYGPKTYNNQNCYGNEQPEFIPRQS 662
G G YGN+ G NY NYG YN+ Y + + P +S
Sbjct: 261 GYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKS 318
>U76713-1|AAC50956.1| 331|Homo sapiens ABBP-1 protein.
Length = 331
Score = 34.3 bits (75), Expect = 0.63
Identities = 25/83 (30%), Positives = 33/83 (39%), Gaps = 1/83 (1%)
Frame = +3
Query: 459 RNNFNNGNQPPKKNNFNGDKSPG-NMQYGNKNDFGGPKQQNYNKNYGPKTYNNQNCYGNE 635
R N N GN+ G +S N YGN + G QQ Y YG Y+ YG
Sbjct: 244 RGNRNRGNRGSGGGGGGGGQSQSWNQGYGNYWNQGYGYQQGYGPGYGGYDYSPYGYYG-- 301
Query: 636 QPEFIPRQSYSPNSVQHSLNDRK 704
+ P YS S + + R+
Sbjct: 302 ---YGPGYDYSQGSTNYGKSQRR 321
>BC036708-1|AAH36708.1| 332|Homo sapiens heterogeneous nuclear
ribonucleoprotein A/B protein.
Length = 332
Score = 34.3 bits (75), Expect = 0.63
Identities = 25/83 (30%), Positives = 33/83 (39%), Gaps = 1/83 (1%)
Frame = +3
Query: 459 RNNFNNGNQPPKKNNFNGDKSPG-NMQYGNKNDFGGPKQQNYNKNYGPKTYNNQNCYGNE 635
R N N GN+ G +S N YGN + G QQ Y YG Y+ YG
Sbjct: 245 RGNRNRGNRGSGGGGGGGGQSQSWNQGYGNYWNQGYGYQQGYGPGYGGYDYSPYGYYG-- 302
Query: 636 QPEFIPRQSYSPNSVQHSLNDRK 704
+ P YS S + + R+
Sbjct: 303 ---YGPGYDYSQGSTNYGKSQRR 322
>AK097657-1|BAC05134.1| 332|Homo sapiens protein ( Homo sapiens
cDNA FLJ40338 fis, clone TESTI2032067, highly similar to
Rattus norvegicus mRNA for type A/B hnRNP protein p40.
).
Length = 332
Score = 34.3 bits (75), Expect = 0.63
Identities = 25/83 (30%), Positives = 33/83 (39%), Gaps = 1/83 (1%)
Frame = +3
Query: 459 RNNFNNGNQPPKKNNFNGDKSPG-NMQYGNKNDFGGPKQQNYNKNYGPKTYNNQNCYGNE 635
R N N GN+ G +S N YGN + G QQ Y YG Y+ YG
Sbjct: 245 RGNRNRGNRGSGGGGGGGGQSQSWNQGYGNYWNQGYGYQQGYGPGYGGYDYSPYGYYG-- 302
Query: 636 QPEFIPRQSYSPNSVQHSLNDRK 704
+ P YS S + + R+
Sbjct: 303 ---YGPGYDYSQGSTNYGKSQRR 322
>BC007435-1|AAH07435.1| 391|Homo sapiens RNA binding motif protein,
X-linked protein.
Length = 391
Score = 33.9 bits (74), Expect = 0.83
Identities = 24/113 (21%), Positives = 52/113 (46%), Gaps = 6/113 (5%)
Frame = +3
Query: 276 GKIPYIKGLPDFGGPKNFGPRPNMMNKNFRPRNDFNEVKNDYNTK---NDGNQNDFGGPK 446
G+ P +G +GGP P P+ + PR+D K+ Y+++ + + D+ P
Sbjct: 179 GRAPVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPP 238
Query: 447 Q---FRPRNNFNNGNQPPKKNNFNGDKSPGNMQYGNKNDFGGPKQQNYNKNYG 596
+ +R + ++ + P + + D + Y + + GG + +Y ++YG
Sbjct: 239 RDYTYRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSD-HPSGGSYRDSY-ESYG 289
>BC006550-1|AAH06550.1| 391|Homo sapiens RNA binding motif protein,
X-linked protein.
Length = 391
Score = 33.9 bits (74), Expect = 0.83
Identities = 24/113 (21%), Positives = 52/113 (46%), Gaps = 6/113 (5%)
Frame = +3
Query: 276 GKIPYIKGLPDFGGPKNFGPRPNMMNKNFRPRNDFNEVKNDYNTK---NDGNQNDFGGPK 446
G+ P +G +GGP P P+ + PR+D K+ Y+++ + + D+ P
Sbjct: 179 GRAPVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPP 238
Query: 447 Q---FRPRNNFNNGNQPPKKNNFNGDKSPGNMQYGNKNDFGGPKQQNYNKNYG 596
+ +R + ++ + P + + D + Y + + GG + +Y ++YG
Sbjct: 239 RDYTYRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSD-HPSGGSYRDSY-ESYG 289
>AY464692-1|AAR28036.1| 391|Homo sapiens heterogeneous nuclear
ribonucleoprotein G protein.
Length = 391
Score = 33.9 bits (74), Expect = 0.83
Identities = 24/113 (21%), Positives = 52/113 (46%), Gaps = 6/113 (5%)
Frame = +3
Query: 276 GKIPYIKGLPDFGGPKNFGPRPNMMNKNFRPRNDFNEVKNDYNTK---NDGNQNDFGGPK 446
G+ P +G +GGP P P+ + PR+D K+ Y+++ + + D+ P
Sbjct: 179 GRAPVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPP 238
Query: 447 Q---FRPRNNFNNGNQPPKKNNFNGDKSPGNMQYGNKNDFGGPKQQNYNKNYG 596
+ +R + ++ + P + + D + Y + + GG + +Y ++YG
Sbjct: 239 RDYTYRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSD-HPSGGSYRDSY-ESYG 289
>AL683813-6|CAI39448.1| 391|Homo sapiens RNA binding motif protein,
X-linked protein.
Length = 391
Score = 33.9 bits (74), Expect = 0.83
Identities = 24/113 (21%), Positives = 52/113 (46%), Gaps = 6/113 (5%)
Frame = +3
Query: 276 GKIPYIKGLPDFGGPKNFGPRPNMMNKNFRPRNDFNEVKNDYNTK---NDGNQNDFGGPK 446
G+ P +G +GGP P P+ + PR+D K+ Y+++ + + D+ P
Sbjct: 179 GRAPVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPP 238
Query: 447 Q---FRPRNNFNNGNQPPKKNNFNGDKSPGNMQYGNKNDFGGPKQQNYNKNYG 596
+ +R + ++ + P + + D + Y + + GG + +Y ++YG
Sbjct: 239 RDYTYRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSD-HPSGGSYRDSY-ESYG 289
>AK096015-1|BAC04674.1| 378|Homo sapiens protein ( Homo sapiens
cDNA FLJ38696 fis, clone KIDNE2001931, highly similar to
HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN G. ).
Length = 378
Score = 33.9 bits (74), Expect = 0.83
Identities = 24/113 (21%), Positives = 52/113 (46%), Gaps = 6/113 (5%)
Frame = +3
Query: 276 GKIPYIKGLPDFGGPKNFGPRPNMMNKNFRPRNDFNEVKNDYNTK---NDGNQNDFGGPK 446
G+ P +G +GGP P P+ + PR+D K+ Y+++ + + D+ P
Sbjct: 166 GRAPVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPP 225
Query: 447 Q---FRPRNNFNNGNQPPKKNNFNGDKSPGNMQYGNKNDFGGPKQQNYNKNYG 596
+ +R + ++ + P + + D + Y + + GG + +Y ++YG
Sbjct: 226 RDYTYRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSD-HPSGGSYRDSY-ESYG 276
>AF266723-1|AAK58567.1| 391|Homo sapiens RBMX protein.
Length = 391
Score = 33.9 bits (74), Expect = 0.83
Identities = 24/113 (21%), Positives = 52/113 (46%), Gaps = 6/113 (5%)
Frame = +3
Query: 276 GKIPYIKGLPDFGGPKNFGPRPNMMNKNFRPRNDFNEVKNDYNTK---NDGNQNDFGGPK 446
G+ P +G +GGP P P+ + PR+D K+ Y+++ + + D+ P
Sbjct: 179 GRAPVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPP 238
Query: 447 Q---FRPRNNFNNGNQPPKKNNFNGDKSPGNMQYGNKNDFGGPKQQNYNKNYG 596
+ +R + ++ + P + + D + Y + + GG + +Y ++YG
Sbjct: 239 RDYTYRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSD-HPSGGSYRDSY-ESYG 289
>X98893-1|CAA67398.1| 589|Homo sapiens hTAFII68 protein.
Length = 589
Score = 33.5 bits (73), Expect = 1.1
Identities = 21/77 (27%), Positives = 29/77 (37%)
Frame = +3
Query: 333 PRPNMMNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQPPKKNNFNG 512
P P+ N NF RN N+ + + DF G R G + + + G
Sbjct: 358 PNPSCGNMNFARRNSCNQCNEPRPEDSRPSGGDFRGRGYGGERGYRGRGGRGGDRGGYGG 417
Query: 513 DKSPGNMQYGNKNDFGG 563
D+S G YG GG
Sbjct: 418 DRSGGG--YGGDRSSGG 432
>U51334-1|AAC50932.1| 592|Homo sapiens putative RNA binding protein
RBP56 protein.
Length = 592
Score = 33.5 bits (73), Expect = 1.1
Identities = 21/77 (27%), Positives = 29/77 (37%)
Frame = +3
Query: 333 PRPNMMNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQPPKKNNFNG 512
P P+ N NF RN N+ + + DF G R G + + + G
Sbjct: 361 PNPSCGNMNFARRNSCNQCNEPRPEDSRPSGGDFRGRGYGGERGYRGRGGRGGDRGGYGG 420
Query: 513 DKSPGNMQYGNKNDFGG 563
D+S G YG GG
Sbjct: 421 DRSGGG--YGGDRSSGG 435
>BC046099-1|AAH46099.2| 592|Homo sapiens TAF15 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 68kD
protein.
Length = 592
Score = 33.5 bits (73), Expect = 1.1
Identities = 21/77 (27%), Positives = 29/77 (37%)
Frame = +3
Query: 333 PRPNMMNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQPPKKNNFNG 512
P P+ N NF RN N+ + + DF G R G + + + G
Sbjct: 361 PNPSCGNMNFARRNSCNQCNEPRPEDSRPSGGDFRGRGYGGERGYRGRGGRGGDRGGYGG 420
Query: 513 DKSPGNMQYGNKNDFGG 563
D+S G YG GG
Sbjct: 421 DRSGGG--YGGDRSSGG 435
>AY197697-1|AAO13485.1| 589|Homo sapiens TAF15 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 68kD
protein.
Length = 589
Score = 33.5 bits (73), Expect = 1.1
Identities = 21/77 (27%), Positives = 29/77 (37%)
Frame = +3
Query: 333 PRPNMMNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQPPKKNNFNG 512
P P+ N NF RN N+ + + DF G R G + + + G
Sbjct: 358 PNPSCGNMNFARRNSCNQCNEPRPEDSRPSGGDFRGRGYGGERGYRGRGGRGGDRGGYGG 417
Query: 513 DKSPGNMQYGNKNDFGG 563
D+S G YG GG
Sbjct: 418 DRSGGG--YGGDRSSGG 432
>AK223425-1|BAD97145.1| 332|Homo sapiens heterogeneous nuclear
ribonucleoprotein AB isoform a variant protein.
Length = 332
Score = 33.5 bits (73), Expect = 1.1
Identities = 25/83 (30%), Positives = 33/83 (39%), Gaps = 1/83 (1%)
Frame = +3
Query: 459 RNNFNNGNQPPKKNNFNGDKSPG-NMQYGNKNDFGGPKQQNYNKNYGPKTYNNQNCYGNE 635
R N N GN+ G +S N YGN + G QQ Y YG Y+ YG
Sbjct: 245 RGNRNRGNRGSGGGGGGGGQSQSWNQGYGNYWNQGYGYQQGYGPGYGGYDYSPYGYYG-- 302
Query: 636 QPEFIPRQSYSPNSVQHSLNDRK 704
+ P YS S + + R+
Sbjct: 303 ---YGPGYDYSQGSTNYGKSRRR 322
>AB010067-2|BAA33812.1| 589|Homo sapiens RBP56/hTAFII68 protein.
Length = 589
Score = 33.5 bits (73), Expect = 1.1
Identities = 21/77 (27%), Positives = 29/77 (37%)
Frame = +3
Query: 333 PRPNMMNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQPPKKNNFNG 512
P P+ N NF RN N+ + + DF G R G + + + G
Sbjct: 358 PNPSCGNMNFARRNSCNQCNEPRPEDSRPSGGDFRGRGYGGERGYRGRGGRGGDRGGYGG 417
Query: 513 DKSPGNMQYGNKNDFGG 563
D+S G YG GG
Sbjct: 418 DRSGGG--YGGDRSSGG 432
>AB010067-1|BAA33811.1| 592|Homo sapiens RBP56/hTAFII68 protein.
Length = 592
Score = 33.5 bits (73), Expect = 1.1
Identities = 21/77 (27%), Positives = 29/77 (37%)
Frame = +3
Query: 333 PRPNMMNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQPPKKNNFNG 512
P P+ N NF RN N+ + + DF G R G + + + G
Sbjct: 361 PNPSCGNMNFARRNSCNQCNEPRPEDSRPSGGDFRGRGYGGERGYRGRGGRGGDRGGYGG 420
Query: 513 DKSPGNMQYGNKNDFGG 563
D+S G YG GG
Sbjct: 421 DRSGGG--YGGDRSSGG 435
>Z97056-3|CAB09792.1| 650|Homo sapiens DEAD (Asp-Glu-Ala-Asp) box
polypeptide 17 protein.
Length = 650
Score = 31.1 bits (67), Expect = 5.9
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 705 LQSKKAKHPGDSLLKPMWDLTKLEPIQKDF 794
L KK +PG+ L K WDL++L +K+F
Sbjct: 26 LPPKKFGNPGERLRKKKWDLSELPKFEKNF 55
>U59321-1|AAC50787.1| 650|Homo sapiens DEAD-box protein p72
protein.
Length = 650
Score = 31.1 bits (67), Expect = 5.9
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 705 LQSKKAKHPGDSLLKPMWDLTKLEPIQKDF 794
L KK +PG+ L K WDL++L +K+F
Sbjct: 26 LPPKKFGNPGERLRKKKWDLSELPKFEKNF 55
>CR456432-1|CAG30318.1| 652|Homo sapiens DDX17 protein.
Length = 652
Score = 31.1 bits (67), Expect = 5.9
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 705 LQSKKAKHPGDSLLKPMWDLTKLEPIQKDF 794
L KK +PG+ L K WDL++L +K+F
Sbjct: 26 LPPKKFGNPGERLRKKKWDLSELPKFEKNF 55
>BX322635-2|CAI42531.1| 693|Homo sapiens TSPY-like 2 protein.
Length = 693
Score = 31.1 bits (67), Expect = 5.9
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Frame = +3
Query: 375 DFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQPPKKNNFNGDKSPGNMQ--YGNK 548
D NEV N+ T N+ + +D ++ N + KN + +++P N + YGN
Sbjct: 483 DHNEVPNNETTDNNESADDHETTDNNESADDNNENPEDNNKNTDDNEENPNNNENTYGN- 541
Query: 549 NDFGGPKQQNYNKNYGPKTYNNQ 617
N F G ++ N +N+
Sbjct: 542 NFFKGGFWGSHGNNQDSSDSDNE 564
>BC024270-1|AAH24270.1| 693|Homo sapiens TSPY-like 2 protein.
Length = 693
Score = 31.1 bits (67), Expect = 5.9
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Frame = +3
Query: 375 DFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQPPKKNNFNGDKSPGNMQ--YGNK 548
D NEV N+ T N+ + +D ++ N + KN + +++P N + YGN
Sbjct: 483 DHNEVPNNETTDNNESADDHETTDNNESADDNNENPEDNNKNTDDNEENPNNNENTYGN- 541
Query: 549 NDFGGPKQQNYNKNYGPKTYNNQ 617
N F G ++ N +N+
Sbjct: 542 NFFKGGFWGSHGNNQDSSDSDNE 564
>BC001566-1|AAH01566.1| 338|Homo sapiens TSPYL2 protein protein.
Length = 338
Score = 31.1 bits (67), Expect = 5.9
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Frame = +3
Query: 375 DFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQPPKKNNFNGDKSPGNMQ--YGNK 548
D NEV N+ T N+ + +D ++ N + KN + +++P N + YGN
Sbjct: 128 DHNEVPNNETTDNNESADDHETTDNNESADDNNENPEDNNKNTDDNEENPNNNENTYGN- 186
Query: 549 NDFGGPKQQNYNKNYGPKTYNNQ 617
N F G ++ N +N+
Sbjct: 187 NFFKGGFWGSHGNNQDSSDSDNE 209
>BC000595-1|AAH00595.2| 729|Homo sapiens DEAD (Asp-Glu-Ala-Asp) box
polypeptide 17 protein.
Length = 729
Score = 31.1 bits (67), Expect = 5.9
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 705 LQSKKAKHPGDSLLKPMWDLTKLEPIQKDF 794
L KK +PG+ L K WDL++L +K+F
Sbjct: 105 LPPKKFGNPGERLRKKKWDLSELPKFEKNF 134
>AY040871-1|AAK72407.1| 693|Homo sapiens cell division autoantigen
1 nucleolar protein protein.
Length = 693
Score = 31.1 bits (67), Expect = 5.9
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Frame = +3
Query: 375 DFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQPPKKNNFNGDKSPGNMQ--YGNK 548
D NEV N+ T N+ + +D ++ N + KN + +++P N + YGN
Sbjct: 483 DHNEVPNNETTDNNESADDHETTDNNESADDNNENPEDNNKNTDDNEENPNNNENTYGN- 541
Query: 549 NDFGGPKQQNYNKNYGPKTYNNQ 617
N F G ++ N +N+
Sbjct: 542 NFFKGGFWGSHGNNQDSSDSDNE 564
>AF273046-1|AAG34906.1| 693|Homo sapiens CTCL tumor antigen se20-4
protein.
Length = 693
Score = 31.1 bits (67), Expect = 5.9
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Frame = +3
Query: 375 DFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQPPKKNNFNGDKSPGNMQ--YGNK 548
D NEV N+ T N+ + +D ++ N + KN + +++P N + YGN
Sbjct: 483 DHNEVPNNETTDNNESADDHETTDNNESADDNNENPEDNNKNTDDNEENPNNNENTYGN- 541
Query: 549 NDFGGPKQQNYNKNYGPKTYNNQ 617
N F G ++ N +N+
Sbjct: 542 NFFKGGFWGSHGNNQDSSDSDNE 564
>AF254794-1|AAG53596.1| 633|Homo sapiens differentially expressed
nucleolar TGF-beta1 target protein protein.
Length = 633
Score = 31.1 bits (67), Expect = 5.9
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Frame = +3
Query: 375 DFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQPPKKNNFNGDKSPGNMQ--YGNK 548
D NEV N+ T N+ + +D ++ N + KN + +++P N + YGN
Sbjct: 423 DHNEVPNNETTDNNESADDHETTDNNESADDNNENPEDNNKNTDDNEENPNNNENTYGN- 481
Query: 549 NDFGGPKQQNYNKNYGPKTYNNQ 617
N F G ++ N +N+
Sbjct: 482 NFFKGGFWGSHGNNQDSSDSDNE 504
>AB209595-1|BAD92832.1| 737|Homo sapiens DEAD box polypeptide 17
isoform p82 variant protein.
Length = 737
Score = 31.1 bits (67), Expect = 5.9
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 705 LQSKKAKHPGDSLLKPMWDLTKLEPIQKDF 794
L KK +PG+ L K WDL++L +K+F
Sbjct: 107 LPPKKFGNPGERLRKKKWDLSELPKFEKNF 136
>AB209182-1|BAD92419.1| 334|Homo sapiens TSPY-like 2 variant
protein.
Length = 334
Score = 31.1 bits (67), Expect = 5.9
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Frame = +3
Query: 375 DFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQPPKKNNFNGDKSPGNMQ--YGNK 548
D NEV N+ T N+ + +D ++ N + KN + +++P N + YGN
Sbjct: 123 DHNEVPNNETTDNNESADDHETTDNNESADDNNENPEDNNKNTDDNEENPNNNENTYGN- 181
Query: 549 NDFGGPKQQNYNKNYGPKTYNNQ 617
N F G ++ N +N+
Sbjct: 182 NFFKGGFWGSHGNNQDSSDSDNE 204
>AB015345-1|BAA34802.1| 486|Homo sapiens HRIHFB2216 protein.
Length = 486
Score = 31.1 bits (67), Expect = 5.9
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Frame = +3
Query: 375 DFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQPPKKNNFNGDKSPGNMQ--YGNK 548
D NEV N+ T N+ + +D ++ N + KN + +++P N + YGN
Sbjct: 276 DHNEVPNNETTDNNESADDHETTDNNESADDNNENPEDNNKNTDDNEENPNNNENTYGN- 334
Query: 549 NDFGGPKQQNYNKNYGPKTYNNQ 617
N F G ++ N +N+
Sbjct: 335 NFFKGGFWGSHGNNQDSSDSDNE 357
>X52104-1|CAA36324.1| 614|Homo sapiens protein ( Human mRNA for p68
protein. ).
Length = 614
Score = 30.7 bits (66), Expect = 7.7
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 705 LQSKKAKHPGDSLLKPMWDLTKLEPIQKDF 794
L KK +PG+ L+K W+L +L +K+F
Sbjct: 29 LSGKKFGNPGEKLVKKKWNLDELPKFEKNF 58
>X15729-1|CAA33751.1| 614|Homo sapiens protein ( Human mRNA for
nuclear p68 protein. ).
Length = 614
Score = 30.7 bits (66), Expect = 7.7
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 705 LQSKKAKHPGDSLLKPMWDLTKLEPIQKDF 794
L KK +PG+ L+K W+L +L +K+F
Sbjct: 29 LSGKKFGNPGEKLVKKKWNLDELPKFEKNF 58
>BX571764-1|CAE11890.1| 406|Homo sapiens hypothetical protein
protein.
Length = 406
Score = 30.7 bits (66), Expect = 7.7
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 705 LQSKKAKHPGDSLLKPMWDLTKLEPIQKDF 794
L KK +PG+ L+K W+L +L +K+F
Sbjct: 29 LSGKKFGNPGEKLVKKKWNLDELPKFEKNF 58
>BT006943-1|AAP35589.1| 614|Homo sapiens DEAD/H
(Asp-Glu-Ala-Asp/His) box polypeptide 5 (RNA helicase,
68kDa) protein.
Length = 614
Score = 30.7 bits (66), Expect = 7.7
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 705 LQSKKAKHPGDSLLKPMWDLTKLEPIQKDF 794
L KK +PG+ L+K W+L +L +K+F
Sbjct: 29 LSGKKFGNPGEKLVKKKWNLDELPKFEKNF 58
>BC016027-1|AAH16027.1| 614|Homo sapiens DEAD (Asp-Glu-Ala-Asp) box
polypeptide 5 protein.
Length = 614
Score = 30.7 bits (66), Expect = 7.7
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 705 LQSKKAKHPGDSLLKPMWDLTKLEPIQKDF 794
L KK +PG+ L+K W+L +L +K+F
Sbjct: 29 LSGKKFGNPGEKLVKKKWNLDELPKFEKNF 58
>AF015812-1|AAB84094.1| 614|Homo sapiens RNA helicase p68 protein.
Length = 614
Score = 30.7 bits (66), Expect = 7.7
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 705 LQSKKAKHPGDSLLKPMWDLTKLEPIQKDF 794
L KK +PG+ L+K W+L +L +K+F
Sbjct: 29 LSGKKFGNPGEKLVKKKWNLDELPKFEKNF 58
>AB209919-1|BAD93156.1| 457|Homo sapiens Hypothetical protein
DKFZp686J01190 variant protein.
Length = 457
Score = 30.7 bits (66), Expect = 7.7
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 705 LQSKKAKHPGDSLLKPMWDLTKLEPIQKDF 794
L KK +PG+ L+K W+L +L +K+F
Sbjct: 80 LSGKKFGNPGEKLVKKKWNLDELPKFEKNF 109
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,009,728
Number of Sequences: 237096
Number of extensions: 2746062
Number of successful extensions: 5714
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 5298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5695
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11936890730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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