Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_I20
(888 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr... 63 4e-11
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe... 29 1.2
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ... 28 2.0
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 27 3.6
SPCC1919.01 |ppk34|SPCC830.12|serine/threonine protein kinase Pp... 27 4.7
SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom... 26 8.2
SPCC24B10.14c |xlf1|nej1, mug104|xrcc4 like factor|Schizosacchar... 26 8.2
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo... 26 8.2
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 26 8.2
>SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 322
Score = 63.3 bits (147), Expect = 4e-11
Identities = 31/48 (64%), Positives = 39/48 (81%), Gaps = 1/48 (2%)
Frame = +1
Query: 268 MSALDQLKQHSTVV-ADTGDFEAMKEYKPTDATTNPSLILSAAGMEQY 408
MS+L+QLK TVV +DTGDFE++ +YKP DATTNPSLIL+A+ QY
Sbjct: 1 MSSLEQLKATGTVVVSDTGDFESIAKYKPQDATTNPSLILAASKKPQY 48
Score = 57.2 bits (132), Expect = 3e-09
Identities = 27/50 (54%), Positives = 32/50 (64%)
Frame = +3
Query: 426 AIKYGKDNGSSIEEQVAETLDMLSVLFGCEILKIIPGRVSVEVDARLSFD 575
A+ Y K G SI Q+ D L + FG +IL I+PGRVS EVDAR SFD
Sbjct: 55 AVDYAKAKGGSINSQIEIAFDRLLIEFGTKILAIVPGRVSTEVDARYSFD 104
>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 652
Score = 28.7 bits (61), Expect = 1.2
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +1
Query: 229 VSMSGEPD-TKRTKMSALDQLKQHSTVVADTGDFEAMKEYKPTDATTNPSLILSAAGMEQ 405
VS S PD TKR S L ++K + ++ K+ KP+ T+ + L+ A M
Sbjct: 141 VSQSFFPDVTKRLPCSCLSEIKNIDDLGLKQRILDSYKKQKPSGQLTSMQIELAKA-MFN 199
Query: 406 YQHILIKLLNME 441
YQ + ++M+
Sbjct: 200 YQDVFFTNMSMK 211
>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1150
Score = 27.9 bits (59), Expect = 2.0
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 6/35 (17%)
Frame = +3
Query: 525 IIPGRVSVEV------DARLSFDKGCKHSQKQLNL 611
IIPGR ++ D+ LSF K C HS KQ+ +
Sbjct: 644 IIPGRYHLKTIVFKLKDSVLSFQKDCLHSNKQIEV 678
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 27.1 bits (57), Expect = 3.6
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -3
Query: 568 DNLASTSTDTRPGIIFNISHPKSTLSISKVSATCSSMELPL 446
+N S+ ++ I N S P +S + +SAT S+E+P+
Sbjct: 170 ENRIHVSSASKVASISNTSKPNPIVSENPISATSVSIEIPI 210
>SPCC1919.01 |ppk34|SPCC830.12|serine/threonine protein kinase
Ppk34|Schizosaccharomyces pombe|chr 3|||Manual
Length = 354
Score = 26.6 bits (56), Expect = 4.7
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Frame = +3
Query: 510 CEILKIIPGRVSVEVDARLSFD----KGCKHSQKQLNLSIXFAXHG 635
C +L PG VD +SFD + C+ S +QL L++ + HG
Sbjct: 149 CMVLNYCPGGKLASVDHGISFDPMPLETCRKSFRQLVLAVNY-IHG 193
>SPAC6G10.08 |idp1||isocitrate dehydrogenase
Idp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 418
Score = 25.8 bits (54), Expect = 8.2
Identities = 9/30 (30%), Positives = 20/30 (66%)
Frame = -2
Query: 515 FTPKKHTQHIQSFSHLFFNGASIILSIFNS 426
FTPK + ++++ FNG+ + +S++N+
Sbjct: 166 FTPKGNPSAKETYNVYEFNGSGVAMSMYNT 195
>SPCC24B10.14c |xlf1|nej1, mug104|xrcc4 like
factor|Schizosaccharomyces pombe|chr 3|||Manual
Length = 203
Score = 25.8 bits (54), Expect = 8.2
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 580 PLSNDNLASTSTDTRPGIIFNISHPKSTL 494
PL N +L + TDT PG + +I + +L
Sbjct: 130 PLINHHLFESETDTSPGSLMSIIRDQKSL 158
>SPBC19G7.10c |||topoisomerase associated protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 744
Score = 25.8 bits (54), Expect = 8.2
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -3
Query: 613 DKFNCFWLCLHPLSNDNLASTSTDTRPGIIFNISHPK 503
+K W L+ N++L ++S TRP I ISHPK
Sbjct: 497 EKLESIWKALY--INESLEASSK-TRPPFISIISHPK 530
>SPBC3F6.05 |rga1||GTPase activating protein
Rga1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1150
Score = 25.8 bits (54), Expect = 8.2
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +3
Query: 441 KDNGSSIEEQVAETLDMLSVLFG-CEILKIIPGRVSVEVDARLSFDKGCKHSQKQ 602
K + S I + VA D LS+ G LK++ R+S+ RL D CKH+ Q
Sbjct: 398 KCHNSDIRD-VAIVQDFLSLFTGLAHYLKLLI-RISLTGGLRLEQDHACKHALPQ 450
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,590,716
Number of Sequences: 5004
Number of extensions: 50041
Number of successful extensions: 123
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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