Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_I20
         (888 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0355 - 3122374-3122520,3122912-3123047,3123124-3123221,312...    36   0.057
04_04_1498 + 34002677-34003104,34004427-34004532,34004643-340048...    29   6.5  

>08_01_0355 -
           3122374-3122520,3122912-3123047,3123124-3123221,
           3123724-3123801,3123876-3123945,3124452-3124516,
           3124606-3124686,3124822-3124926,3125002-3125085,
           3125175-3125250,3125358-3125436,3125526-3125646,
           3125768-3125827
          Length = 399

 Score = 35.5 bits (78), Expect = 0.057
 Identities = 13/23 (56%), Positives = 19/23 (82%)
 Frame = +3

Query: 507 GCEILKIIPGRVSVEVDARLSFD 575
           G E+  ++PGRVS E+DARL++D
Sbjct: 146 GAEMAHLVPGRVSTEIDARLAYD 168


>04_04_1498 +
           34002677-34003104,34004427-34004532,34004643-34004811,
           34004901-34005088,34005644-34005763
          Length = 336

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 20/76 (26%), Positives = 33/76 (43%)
 Frame = +1

Query: 214 CNISLVSMSGEPDTKRTKMSALDQLKQHSTVVADTGDFEAMKEYKPTDATTNPSLILSAA 393
           CN  L  + G   T   KM+ L  L +H T +         K++KP++  T P  +++  
Sbjct: 203 CNDELRVVFGTDTTDMFKMNKL--LAKHITPLDPKDQIREAKKFKPSNVATQPMPLINQP 260

Query: 394 GMEQYQHILIKLLNME 441
            +      L K + ME
Sbjct: 261 SV-VISDALAKFIGME 275


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,212,222
Number of Sequences: 37544
Number of extensions: 272889
Number of successful extensions: 585
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)