Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_I20
         (888 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006729-1|AAK93861.1|  319|Caenorhabditis elegans Hypothetical ...    75   5e-14
L16559-9|AAA27928.2| 1148|Caenorhabditis elegans Hypothetical pr...    32   0.48 
U28730-1|AAA68261.1|  113|Caenorhabditis elegans Hypothetical pr...    31   0.83 

>AC006729-1|AAK93861.1|  319|Caenorhabditis elegans Hypothetical
           protein Y24D9A.8a protein.
          Length = 319

 Score = 75.4 bits (177), Expect = 5e-14
 Identities = 35/51 (68%), Positives = 43/51 (84%)
 Frame = +1

Query: 268 MSALDQLKQHSTVVADTGDFEAMKEYKPTDATTNPSLILSAAGMEQYQHIL 420
           MS L+QLK  S VVADTGDF A+KE++PTDATTNPSLIL+A+ MEQY  ++
Sbjct: 1   MSVLEQLKGASVVVADTGDFNAIKEFQPTDATTNPSLILAASKMEQYAALI 51



 Score = 61.7 bits (143), Expect = 7e-10
 Identities = 33/74 (44%), Positives = 44/74 (59%)
 Frame = +3

Query: 423 KAIKYGKDNGSSIEEQVAETLDMLSVLFGCEILKIIPGRVSVEVDARLSFDKGCKHSQKQ 602
           +++ Y K++ S  +E +   +D L V+FG EILK IPGRVS EVDARLSFD       + 
Sbjct: 53  QSVAYAKEHASGHQEVLQAAMDRLFVVFGKEILKTIPGRVSTEVDARLSFDTQAS-IDRA 111

Query: 603 LNLSIXFAXHGIKK 644
           L L   +   GI K
Sbjct: 112 LGLIAQYEKEGISK 125


>L16559-9|AAA27928.2| 1148|Caenorhabditis elegans Hypothetical protein
            C06E1.10 protein.
          Length = 1148

 Score = 32.3 bits (70), Expect = 0.48
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +1

Query: 325  FEAMKEYKPTDATTNPSLILSAAGMEQYQHILI-KLLNMERIMEAPLKNKWLK 480
            FE +KEY P       +++ S A +++   +L+ KL+  E    + LK +WLK
Sbjct: 1053 FEKLKEYTPKLLAPPSTMVKSWAKLQKRTEMLLNKLIEKEVTTRSSLKEQWLK 1105


>U28730-1|AAA68261.1|  113|Caenorhabditis elegans Hypothetical
           protein K10B2.4 protein.
          Length = 113

 Score = 31.5 bits (68), Expect = 0.83
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = +1

Query: 343 YKPTDATTNPSLILSAAGMEQYQHILIKLLNMERIMEAPLKNKWLKLWIC*VC 501
           YKP D+T N    +S   + +Y ++L  + +M  +M   ++ KW   W+  VC
Sbjct: 16  YKPLDSTANQQQAISEDPLPEYMNVLGMIFSMCGLM---IRMKWCS-WLALVC 64


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,917,992
Number of Sequences: 27780
Number of extensions: 267556
Number of successful extensions: 583
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)