Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_I19
         (1090 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q00454 Cluster: 60S ribosomal protein L27a; n=3; Eukary...    66   2e-09
UniRef50_P46776 Cluster: 60S ribosomal protein L27a; n=204; Euka...    63   1e-08
UniRef50_A1BQ56 Cluster: Ribosomal protein L27a; n=4; Bilateria|...    62   3e-08
UniRef50_Q00V89 Cluster: 60s ribosomal protein L15/L27; n=2; Ost...    61   6e-08
UniRef50_Q9LR33 Cluster: 60S ribosomal protein L27a-2; n=56; Euk...    51   6e-05
UniRef50_UPI0000DA3FAD Cluster: PREDICTED: similar to 60S riboso...    48   6e-04
UniRef50_Q9AW02 Cluster: 60S ribosomal protein L27A; n=3; Eukary...    44   0.007
UniRef50_Q9LPV3 Cluster: Putative 60S ribosomal protein L27a-1; ...    43   0.012
UniRef50_Q4P992 Cluster: Putative uncharacterized protein; n=1; ...    41   0.064
UniRef50_O62581 Cluster: 60S ribosomal protein L27a; n=1; Enceph...    37   1.0  

>UniRef50_Q00454 Cluster: 60S ribosomal protein L27a; n=3;
           Eukaryota|Rep: 60S ribosomal protein L27a - Tetrahymena
           thermophila
          Length = 149

 Score = 65.7 bits (153), Expect = 2e-09
 Identities = 29/35 (82%), Positives = 33/35 (94%)
 Frame = -1

Query: 226 KGKLPNQPVIVKAKFFSKTAERKIKKVGGACVLTA 122
           KG+LPNQPV+VKAK+FSKTAER+I  VGGACVLTA
Sbjct: 115 KGRLPNQPVVVKAKYFSKTAERRIVAVGGACVLTA 149


>UniRef50_P46776 Cluster: 60S ribosomal protein L27a; n=204;
           Eukaryota|Rep: 60S ribosomal protein L27a - Homo sapiens
           (Human)
          Length = 148

 Score = 62.9 bits (146), Expect = 1e-08
 Identities = 29/35 (82%), Positives = 30/35 (85%)
 Frame = -1

Query: 226 KGKLPNQPVIVKAKFFSKTAERKIKKVGGACVLTA 122
           KGKLP QPVIVKAKFFS+ AE KIK VGGACVL A
Sbjct: 114 KGKLPKQPVIVKAKFFSRRAEEKIKSVGGACVLVA 148


>UniRef50_A1BQ56 Cluster: Ribosomal protein L27a; n=4;
           Bilateria|Rep: Ribosomal protein L27a - Ascaris suum
           (Pig roundworm) (Ascaris lumbricoides)
          Length = 133

 Score = 61.7 bits (143), Expect = 3e-08
 Identities = 28/35 (80%), Positives = 31/35 (88%)
 Frame = -1

Query: 226 KGKLPNQPVIVKAKFFSKTAERKIKKVGGACVLTA 122
           KG LP QPVIVKAKFFS+TAE+KIK VGGAC+L A
Sbjct: 99  KGLLPKQPVIVKAKFFSRTAEQKIKGVGGACILVA 133


>UniRef50_Q00V89 Cluster: 60s ribosomal protein L15/L27; n=2;
           Ostreococcus|Rep: 60s ribosomal protein L15/L27 -
           Ostreococcus tauri
          Length = 198

 Score = 60.9 bits (141), Expect = 6e-08
 Identities = 25/35 (71%), Positives = 32/35 (91%)
 Frame = -1

Query: 226 KGKLPNQPVIVKAKFFSKTAERKIKKVGGACVLTA 122
           KG+LPNQPV+VK ++ SK AE+KIK+VGGAC+LTA
Sbjct: 164 KGQLPNQPVVVKCRYISKLAEKKIKEVGGACILTA 198


>UniRef50_Q9LR33 Cluster: 60S ribosomal protein L27a-2; n=56;
           Eukaryota|Rep: 60S ribosomal protein L27a-2 -
           Arabidopsis thaliana (Mouse-ear cress)
          Length = 146

 Score = 50.8 bits (116), Expect = 6e-05
 Identities = 25/36 (69%), Positives = 29/36 (80%), Gaps = 1/36 (2%)
 Frame = -1

Query: 226 KGKLP-NQPVIVKAKFFSKTAERKIKKVGGACVLTA 122
           KG LP N+P +VKAK  SKTAE+KIK+ GGA VLTA
Sbjct: 111 KGHLPENKPFVVKAKLISKTAEKKIKEAGGAVVLTA 146


>UniRef50_UPI0000DA3FAD Cluster: PREDICTED: similar to 60S ribosomal
           protein L27a; n=1; Rattus norvegicus|Rep: PREDICTED:
           similar to 60S ribosomal protein L27a - Rattus
           norvegicus
          Length = 86

 Score = 47.6 bits (108), Expect = 6e-04
 Identities = 23/35 (65%), Positives = 27/35 (77%)
 Frame = -1

Query: 226 KGKLPNQPVIVKAKFFSKTAERKIKKVGGACVLTA 122
           K KLP QPV+VKA+  S+ AE KI+ VGGACVL A
Sbjct: 52  KRKLPKQPVMVKAEGSSRRAEEKIEGVGGACVLVA 86


>UniRef50_Q9AW02 Cluster: 60S ribosomal protein L27A; n=3;
           Eukaryota|Rep: 60S ribosomal protein L27A - Guillardia
           theta (Cryptomonas phi)
          Length = 144

 Score = 44.0 bits (99), Expect = 0.007
 Identities = 17/34 (50%), Positives = 25/34 (73%)
 Frame = -1

Query: 226 KGKLPNQPVIVKAKFFSKTAERKIKKVGGACVLT 125
           +G++  +P ++KA  FSK A +KIKK GG C+LT
Sbjct: 110 RGRMVQKPFVIKANSFSKVAVKKIKKAGGYCILT 143


>UniRef50_Q9LPV3 Cluster: Putative 60S ribosomal protein L27a-1;
           n=1; Arabidopsis thaliana|Rep: Putative 60S ribosomal
           protein L27a-1 - Arabidopsis thaliana (Mouse-ear cress)
          Length = 104

 Score = 43.2 bits (97), Expect = 0.012
 Identities = 22/35 (62%), Positives = 26/35 (74%), Gaps = 1/35 (2%)
 Frame = -1

Query: 226 KGKLP-NQPVIVKAKFFSKTAERKIKKVGGACVLT 125
           KG LP N+PV+VKAK  S T E+KIK+ G A VLT
Sbjct: 66  KGFLPENKPVVVKAKLVSNTDEKKIKEAGSAVVLT 100


>UniRef50_Q4P992 Cluster: Putative uncharacterized protein; n=1;
           Ustilago maydis|Rep: Putative uncharacterized protein -
           Ustilago maydis (Smut fungus)
          Length = 187

 Score = 40.7 bits (91), Expect = 0.064
 Identities = 19/35 (54%), Positives = 24/35 (68%)
 Frame = -1

Query: 226 KGKLPNQPVIVKAKFFSKTAERKIKKVGGACVLTA 122
           KG+LP  P IVKA++ S  AE+KIK+ GG   L A
Sbjct: 153 KGRLPALPCIVKARWVSSLAEKKIKEAGGVVKLVA 187


>UniRef50_O62581 Cluster: 60S ribosomal protein L27a; n=1;
           Encephalitozoon cuniculi|Rep: 60S ribosomal protein L27a
           - Encephalitozoon cuniculi
          Length = 147

 Score = 36.7 bits (81), Expect = 1.0
 Identities = 16/36 (44%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
 Frame = -1

Query: 229 VKGKLP-NQPVIVKAKFFSKTAERKIKKVGGACVLT 125
           V GKL   +P++VKA++F+ +A+ +I KVGG  ++T
Sbjct: 111 VGGKLSLERPIVVKARYFTPSAKEEITKVGGKWIIT 146


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 333,053,779
Number of Sequences: 1657284
Number of extensions: 3537105
Number of successful extensions: 3685
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3685
length of database: 575,637,011
effective HSP length: 102
effective length of database: 406,594,043
effective search space used: 105714451180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)