Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_I19
         (1090 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein L27a.2/L28A|Sc...    41   3e-04
SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B 27a|Schi...    41   3e-04
SPCC4B3.11c |||conserved eukaryotic protein|Schizosaccharomyces ...    28   2.6  

>SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein
           L27a.2/L28A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 148

 Score = 41.1 bits (92), Expect = 3e-04
 Identities = 18/35 (51%), Positives = 24/35 (68%)
 Frame = -1

Query: 226 KGKLPNQPVIVKAKFFSKTAERKIKKVGGACVLTA 122
           KG+LP  PVIV+ ++ S+ AE KIK+ GG   L A
Sbjct: 114 KGRLPETPVIVQTRYVSRRAEEKIKQAGGVVELIA 148


>SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B
           27a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score = 41.1 bits (92), Expect = 3e-04
 Identities = 17/35 (48%), Positives = 25/35 (71%)
 Frame = -1

Query: 226 KGKLPNQPVIVKAKFFSKTAERKIKKVGGACVLTA 122
           KG+LP+ PVI++ ++ S+ AE KIK+ GG   L A
Sbjct: 114 KGRLPDTPVIIQTRYVSRRAEEKIKQAGGVVELIA 148


>SPCC4B3.11c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 116

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -1

Query: 220 KLPNQPVIVKAKFFSKTAERKIKKV 146
           K P +P+I+  +F+S   ER+IK +
Sbjct: 15  KNPQKPLIITKRFYSTPGERRIKDI 39


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,235,326
Number of Sequences: 5004
Number of extensions: 12141
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 573748416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)