Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_I19
         (1090 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1250 - 25183375-25183815                                         51   1e-06
03_04_0027 + 16593133-16593573                                         47   3e-05
02_01_0563 + 4134954-4135388                                           46   5e-05

>07_03_1250 - 25183375-25183815
          Length = 146

 Score = 51.2 bits (117), Expect = 1e-06
 Identities = 23/35 (65%), Positives = 27/35 (77%)
 Frame = -1

Query: 226 KGKLPNQPVIVKAKFFSKTAERKIKKVGGACVLTA 122
           KG LP +P++VKAK  SK AE+KIK  GGA VLTA
Sbjct: 112 KGLLPEKPIVVKAKLISKVAEKKIKAAGGAVVLTA 146


>03_04_0027 + 16593133-16593573
          Length = 146

 Score = 46.8 bits (106), Expect = 3e-05
 Identities = 23/36 (63%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
 Frame = -1

Query: 226 KGKLPNQ-PVIVKAKFFSKTAERKIKKVGGACVLTA 122
           KG LP Q P++VKAK  SK AE+KIK  GGA +LTA
Sbjct: 111 KGMLPPQRPIVVKAKLISKVAEKKIKAAGGAVLLTA 146


>02_01_0563 + 4134954-4135388
          Length = 144

 Score = 46.0 bits (104), Expect = 5e-05
 Identities = 22/36 (61%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
 Frame = -1

Query: 226 KGKLP-NQPVIVKAKFFSKTAERKIKKVGGACVLTA 122
           KG LP  +P++VKAK  SK AE+KIK  GGA +LTA
Sbjct: 109 KGMLPPERPIVVKAKLISKVAEKKIKAAGGAVLLTA 144


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,265,034
Number of Sequences: 37544
Number of extensions: 124942
Number of successful extensions: 110
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3257937684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)