Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_I18
         (872 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    29   0.86 
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch...    29   1.1  
SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy...    26   6.1  
SPBC21H7.07c |his5||imidazoleglycerol phosphate dehydratase|Schi...    26   6.1  

>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
           subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 29.1 bits (62), Expect = 0.86
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = +2

Query: 449 TDDDHRKVSYFRSLRPDVYYSYGEFCHIPPGVQLSPHCFWS 571
           T D+++++  F++L+PD    YG    +PP +Q  P  +W+
Sbjct: 704 TRDEYQQL-LFQALKPDETGMYGRIKTLPPAIQ-RPGIYWT 742


>SPAC1952.17c ||SPAC890.01c|GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 619

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = +3

Query: 681 QQLHKF*DLLSTDGTHYVPDICTTCYXYIDKXYXL---VWLLVI 803
           Q++ KF D+L+++    +P +C+ C   I   Y L    W+L++
Sbjct: 5   QRIEKFKDILNSEEPISLPGLCSLCIQGIPDEYSLRAKAWMLML 48


>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 557

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 321 LIIIGVFLCTIPYWDVDNGVLRTNTTNWQHDVAAITIFF 437
           ++I G+ LC I Y  +     +   + WQ+ V A  I F
Sbjct: 404 VMIAGLALCAIAYHFLPADTTQNTNSGWQYVVLASIIIF 442


>SPBC21H7.07c |his5||imidazoleglycerol phosphate
           dehydratase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 416 GCNYHIFLLAGTDDDHRKVSYFRSL 490
           G   H+  L G++D HR  S F+SL
Sbjct: 169 GITLHVTCLYGSNDHHRAESAFKSL 193


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,455,190
Number of Sequences: 5004
Number of extensions: 73606
Number of successful extensions: 166
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)