Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_I18
(872 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z72504-1|CAA96603.2| 1193|Caenorhabditis elegans Hypothetical pr... 84 1e-16
EF535106-1|ABQ15208.1| 1206|Caenorhabditis elegans transient rec... 84 1e-16
Z71265-5|CAA95836.1| 481|Caenorhabditis elegans Hypothetical pr... 36 0.029
L16685-6|ABD63199.1| 1047|Caenorhabditis elegans Trp (transient ... 35 0.066
L16685-5|AAA28167.3| 1027|Caenorhabditis elegans Trp (transient ... 35 0.066
AJ276027-1|CAC81654.1| 1027|Caenorhabditis elegans TRP homologou... 35 0.066
Z95559-16|CAB63365.3| 1440|Caenorhabditis elegans Hypothetical p... 31 1.4
Z93388-15|CAB07667.1| 356|Caenorhabditis elegans Hypothetical p... 30 2.5
Z93374-10|CAB07561.1| 356|Caenorhabditis elegans Hypothetical p... 30 2.5
U41263-7|AAC24431.1| 462|Caenorhabditis elegans Hypothetical pr... 30 2.5
Z99282-2|CAB16533.1| 613|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z93374-1|CAB07554.1| 346|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z83129-12|CAB05645.1| 613|Caenorhabditis elegans Hypothetical p... 29 4.3
U80838-3|AAC71113.1| 453|Caenorhabditis elegans Abnormal cell l... 29 4.3
U80838-1|AAU05570.1| 597|Caenorhabditis elegans Abnormal cell l... 29 4.3
AF183400-1|AAF13188.1| 453|Caenorhabditis elegans LIN-42 protein. 29 4.3
AF098995-3|AAC67483.1| 276|Caenorhabditis elegans F-box b prote... 29 5.7
>Z72504-1|CAA96603.2| 1193|Caenorhabditis elegans Hypothetical protein
C29E6.2 protein.
Length = 1193
Score = 83.8 bits (198), Expect = 1e-16
Identities = 50/151 (33%), Positives = 75/151 (49%), Gaps = 5/151 (3%)
Frame = +3
Query: 171 ENATCNVPTYLRP-VQYLILI--LNLCFLAKEIFQACQDWSAYIRQWENWLQWLIIIGVF 341
EN TC +P V + I+I L +C + E FQ Q AY+ WENW+ I
Sbjct: 837 ENETCPQINTTKPDVVWKIIIQTLAVCQILVECFQLFQRKFAYLVNWENWIDCFIYSTAL 896
Query: 342 LCTIPYWDVD--NGVLRTNTTNWQHDVAAITIFFCWLELMMIIGRFPTFGLYVQMFTTVT 515
+ + + +GV + NWQ +AA+ IFF W+ L+ +I + P FG++V MF +
Sbjct: 897 ITVYDFSECSATSGVRQ----NWQWILAALCIFFGWINLLFMIRKMPRFGIFVVMFVDIV 952
Query: 516 VNFATFLLAYSCLLIAFGLAFSVLFSNYPAF 608
F F + +IAF +F V+ N P F
Sbjct: 953 KTFFRFFPVFVLFIIAFSSSFYVILQNRPEF 983
>EF535106-1|ABQ15208.1| 1206|Caenorhabditis elegans transient receptor
potential subfamilyA-1 protein.
Length = 1206
Score = 83.8 bits (198), Expect = 1e-16
Identities = 50/151 (33%), Positives = 75/151 (49%), Gaps = 5/151 (3%)
Frame = +3
Query: 171 ENATCNVPTYLRP-VQYLILI--LNLCFLAKEIFQACQDWSAYIRQWENWLQWLIIIGVF 341
EN TC +P V + I+I L +C + E FQ Q AY+ WENW+ I
Sbjct: 850 ENETCPQINTTKPDVVWKIIIQTLAVCQILVECFQLFQRKFAYLVNWENWIDCFIYSTAL 909
Query: 342 LCTIPYWDVD--NGVLRTNTTNWQHDVAAITIFFCWLELMMIIGRFPTFGLYVQMFTTVT 515
+ + + +GV + NWQ +AA+ IFF W+ L+ +I + P FG++V MF +
Sbjct: 910 ITVYDFSECSATSGVRQ----NWQWILAALCIFFGWINLLFMIRKMPRFGIFVVMFVDIV 965
Query: 516 VNFATFLLAYSCLLIAFGLAFSVLFSNYPAF 608
F F + +IAF +F V+ N P F
Sbjct: 966 KTFFRFFPVFVLFIIAFSSSFYVILQNRPEF 996
>Z71265-5|CAA95836.1| 481|Caenorhabditis elegans Hypothetical
protein M05B5.6 protein.
Length = 481
Score = 36.3 bits (80), Expect = 0.029
Identities = 19/55 (34%), Positives = 29/55 (52%)
Frame = +3
Query: 423 ITIFFCWLELMMIIGRFPTFGLYVQMFTTVTVNFATFLLAYSCLLIAFGLAFSVL 587
I I W L+ I+ + P FG+Y+ M T + +FA + LIAF AF ++
Sbjct: 195 IAIISAWANLLYIMRKSP-FGIYIFMMTRILRSFAHIATIWIPTLIAFSFAFLLI 248
>L16685-6|ABD63199.1| 1047|Caenorhabditis elegans Trp (transient
receptor potential)channel family protein 1, isoform b
protein.
Length = 1047
Score = 35.1 bits (77), Expect = 0.066
Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Frame = +3
Query: 210 VQYLILILNLCFLAKEIFQACQD-WSAYIRQWENWLQWLIIIGVFLCTI 353
V+ L+ + L EI Q ++ + Y+RQW NWL +L+I ++LCTI
Sbjct: 456 VESLVFTWVIGMLWSEIKQLWEEGFKRYMRQWWNWLDFLMIC-LYLCTI 503
>L16685-5|AAA28167.3| 1027|Caenorhabditis elegans Trp (transient
receptor potential)channel family protein 1, isoform a
protein.
Length = 1027
Score = 35.1 bits (77), Expect = 0.066
Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Frame = +3
Query: 210 VQYLILILNLCFLAKEIFQACQD-WSAYIRQWENWLQWLIIIGVFLCTI 353
V+ L+ + L EI Q ++ + Y+RQW NWL +L+I ++LCTI
Sbjct: 436 VESLVFTWVIGMLWSEIKQLWEEGFKRYMRQWWNWLDFLMIC-LYLCTI 483
>AJ276027-1|CAC81654.1| 1027|Caenorhabditis elegans TRP homologous
cation channel proteinprotein.
Length = 1027
Score = 35.1 bits (77), Expect = 0.066
Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Frame = +3
Query: 210 VQYLILILNLCFLAKEIFQACQD-WSAYIRQWENWLQWLIIIGVFLCTI 353
V+ L+ + L EI Q ++ + Y+RQW NWL +L+I ++LCTI
Sbjct: 436 VESLVFTWVIGMLWSEIKQLWEEGFKRYMRQWWNWLDFLMIC-LYLCTI 483
>Z95559-16|CAB63365.3| 1440|Caenorhabditis elegans Hypothetical
protein Y41E3.9 protein.
Length = 1440
Score = 30.7 bits (66), Expect = 1.4
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +2
Query: 524 CHIPPGVQLSPHCFWSS 574
CH+P + ++ HCFWSS
Sbjct: 483 CHLPALIHVARHCFWSS 499
>Z93388-15|CAB07667.1| 356|Caenorhabditis elegans Hypothetical
protein C06C6.1 protein.
Length = 356
Score = 29.9 bits (64), Expect = 2.5
Identities = 18/57 (31%), Positives = 23/57 (40%)
Frame = +3
Query: 414 VAAITIFFCWLELMMIIGRFPTFGLYVQMFTTVTVNFATFLLAYSCLLIAFGLAFSV 584
VA +FF WLELM + L+ + F LL SC L A S+
Sbjct: 66 VAIFELFFGWLELMTVANLISVGSLFTVVVDPEQAFFPDGLLQISCYLYCGSFATSL 122
>Z93374-10|CAB07561.1| 356|Caenorhabditis elegans Hypothetical
protein C06C6.1 protein.
Length = 356
Score = 29.9 bits (64), Expect = 2.5
Identities = 18/57 (31%), Positives = 23/57 (40%)
Frame = +3
Query: 414 VAAITIFFCWLELMMIIGRFPTFGLYVQMFTTVTVNFATFLLAYSCLLIAFGLAFSV 584
VA +FF WLELM + L+ + F LL SC L A S+
Sbjct: 66 VAIFELFFGWLELMTVANLISVGSLFTVVVDPEQAFFPDGLLQISCYLYCGSFATSL 122
>U41263-7|AAC24431.1| 462|Caenorhabditis elegans Hypothetical
protein T19D12.9 protein.
Length = 462
Score = 29.9 bits (64), Expect = 2.5
Identities = 18/62 (29%), Positives = 28/62 (45%)
Frame = +3
Query: 390 NTTNWQHDVAAITIFFCWLELMMIIGRFPTFGLYVQMFTTVTVNFATFLLAYSCLLIAFG 569
N T+W + A ++ F IIG FP+ L + ++F L A S LLI
Sbjct: 60 NQTHWLENTADVSFIFSAGAAGAIIGLFPSVPLTTKFGVRNVLSFYGLLTAVSTLLIPLA 119
Query: 570 LA 575
++
Sbjct: 120 VS 121
>Z99282-2|CAB16533.1| 613|Caenorhabditis elegans Hypothetical
protein W06G6.1 protein.
Length = 613
Score = 29.1 bits (62), Expect = 4.3
Identities = 9/21 (42%), Positives = 17/21 (80%)
Frame = +3
Query: 537 LAYSCLLIAFGLAFSVLFSNY 599
++ +C ++AFG+ F+ LF+NY
Sbjct: 417 ISITCWVVAFGIGFACLFANY 437
>Z93374-1|CAB07554.1| 346|Caenorhabditis elegans Hypothetical
protein C06C6.2 protein.
Length = 346
Score = 29.1 bits (62), Expect = 4.3
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = +3
Query: 414 VAAITIFFCWLELMMIIGRFPTFGLYVQMFTTVTVNFATFLLAYSCLLIAFGLAFSV 584
+A +FF WLELM + + L+ + LL SCL+ A S+
Sbjct: 63 IAVFELFFGWLELMTVTNLYTQGSLFTVVVDPDEAFLPDGLLQISCLIYCGSFATSL 119
>Z83129-12|CAB05645.1| 613|Caenorhabditis elegans Hypothetical
protein W06G6.1 protein.
Length = 613
Score = 29.1 bits (62), Expect = 4.3
Identities = 9/21 (42%), Positives = 17/21 (80%)
Frame = +3
Query: 537 LAYSCLLIAFGLAFSVLFSNY 599
++ +C ++AFG+ F+ LF+NY
Sbjct: 417 ISITCWVVAFGIGFACLFANY 437
>U80838-3|AAC71113.1| 453|Caenorhabditis elegans Abnormal cell
lineage protein 42,isoform c protein.
Length = 453
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +3
Query: 270 CQ-DWSAYIRQWENWLQWLIIIGVFLCTIPYWDVD 371
CQ +WSAY+ W ++ L++ +C++P D D
Sbjct: 247 CQTEWSAYVNPWTRKME-LVVARHRICSLPIGDSD 280
>U80838-1|AAU05570.1| 597|Caenorhabditis elegans Abnormal cell
lineage protein 42,isoform b protein.
Length = 597
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +3
Query: 270 CQ-DWSAYIRQWENWLQWLIIIGVFLCTIPYWDVD 371
CQ +WSAY+ W ++ L++ +C++P D D
Sbjct: 247 CQTEWSAYVNPWTRKME-LVVARHRICSLPIGDSD 280
>AF183400-1|AAF13188.1| 453|Caenorhabditis elegans LIN-42 protein.
Length = 453
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +3
Query: 270 CQ-DWSAYIRQWENWLQWLIIIGVFLCTIPYWDVD 371
CQ +WSAY+ W ++ L++ +C++P D D
Sbjct: 247 CQTEWSAYVNPWTRKME-LVVARHRICSLPIGDSD 280
>AF098995-3|AAC67483.1| 276|Caenorhabditis elegans F-box b protein
protein 17 protein.
Length = 276
Score = 28.7 bits (61), Expect = 5.7
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 631 KTVMMMSGELEYEDIFYNNCTNSEIYY 711
+T+ ++ +L DI NCTN EI+Y
Sbjct: 189 ETLELLEKKLSLNDILTTNCTNLEIHY 215
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,097,500
Number of Sequences: 27780
Number of extensions: 416241
Number of successful extensions: 1068
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1066
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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