Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_I17
(889 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X63469-1|CAA45069.1| 291|Homo sapiens transcription factor TFII... 69 3e-11
S67861-1|AAB20414.1| 291|Homo sapiens general transcription fac... 69 3e-11
BC030572-1|AAH30572.1| 291|Homo sapiens general transcription f... 69 3e-11
AF292062-1|AAG39077.1| 291|Homo sapiens general transcription f... 69 3e-11
>X63469-1|CAA45069.1| 291|Homo sapiens transcription factor TFIIE
beta protein.
Length = 291
Score = 68.5 bits (160), Expect = 3e-11
Identities = 36/83 (43%), Positives = 46/83 (55%)
Frame = +2
Query: 452 NEILDETNQLDVGNKIKQWLQTEALQSNPKIECSPDGKFNFKPVYXXXXXXXXXXXXXXX 631
+EILDET LD+G K KQWL TEAL +NPKIE DGK+ FKP Y
Sbjct: 100 DEILDETQHLDIGLKQKQWLMTEALVNNPKIEVI-DGKYAFKPKYNVRDKKALLRLLDQH 158
Query: 632 XXXXXXXXXXEDVQESLPHCERA 700
ED++E+LP+ ++A
Sbjct: 159 DQRGLGGILLEDIEEALPNSQKA 181
Score = 57.6 bits (133), Expect = 6e-08
Identities = 34/93 (36%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
Frame = +1
Query: 196 KREAFKKXALATPSIEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAS-------NYKTM 354
+RE FKK AL+TP +E S N K +
Sbjct: 8 ERELFKKRALSTPVVEKRSASSESSSSSSKKKKTKVEHGGSSGSKQNSDHSNGSFNLKAL 67
Query: 355 TGSSSYRFGVLARIVRHMRARHQDGDDHPLSLE 453
+GSS Y+FGVLA+IV +M+ RHQ GD HPL+L+
Sbjct: 68 SGSSGYKFGVLAKIVNYMKTRHQRGDTHPLTLD 100
>S67861-1|AAB20414.1| 291|Homo sapiens general transcription factor
IIE 34 kda subunit protein.
Length = 291
Score = 68.5 bits (160), Expect = 3e-11
Identities = 36/83 (43%), Positives = 46/83 (55%)
Frame = +2
Query: 452 NEILDETNQLDVGNKIKQWLQTEALQSNPKIECSPDGKFNFKPVYXXXXXXXXXXXXXXX 631
+EILDET LD+G K KQWL TEAL +NPKIE DGK+ FKP Y
Sbjct: 100 DEILDETQHLDIGLKQKQWLMTEALVNNPKIEVI-DGKYAFKPKYNVRDKKALLRLLDQH 158
Query: 632 XXXXXXXXXXEDVQESLPHCERA 700
ED++E+LP+ ++A
Sbjct: 159 DQRGLGGILLEDIEEALPNSQKA 181
Score = 57.6 bits (133), Expect = 6e-08
Identities = 34/93 (36%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
Frame = +1
Query: 196 KREAFKKXALATPSIEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAS-------NYKTM 354
+RE FKK AL+TP +E S N K +
Sbjct: 8 ERELFKKRALSTPVVEKRSASSESSSSSSKKKKTKVEHGGSSGSKQNSDHSNGSFNLKAL 67
Query: 355 TGSSSYRFGVLARIVRHMRARHQDGDDHPLSLE 453
+GSS Y+FGVLA+IV +M+ RHQ GD HPL+L+
Sbjct: 68 SGSSGYKFGVLAKIVNYMKTRHQRGDTHPLTLD 100
>BC030572-1|AAH30572.1| 291|Homo sapiens general transcription
factor IIE, polypeptide 2, beta 34kDa protein.
Length = 291
Score = 68.5 bits (160), Expect = 3e-11
Identities = 36/83 (43%), Positives = 46/83 (55%)
Frame = +2
Query: 452 NEILDETNQLDVGNKIKQWLQTEALQSNPKIECSPDGKFNFKPVYXXXXXXXXXXXXXXX 631
+EILDET LD+G K KQWL TEAL +NPKIE DGK+ FKP Y
Sbjct: 100 DEILDETQHLDIGLKQKQWLMTEALVNNPKIEVI-DGKYAFKPKYNVRDKKALLRLLDQH 158
Query: 632 XXXXXXXXXXEDVQESLPHCERA 700
ED++E+LP+ ++A
Sbjct: 159 DQRGLGGILLEDIEEALPNSQKA 181
Score = 57.6 bits (133), Expect = 6e-08
Identities = 34/93 (36%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
Frame = +1
Query: 196 KREAFKKXALATPSIEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAS-------NYKTM 354
+RE FKK AL+TP +E S N K +
Sbjct: 8 ERELFKKRALSTPVVEKRSASSESSSSSSKKKKTKVEHGGSSGSKQNSDHSNGSFNLKAL 67
Query: 355 TGSSSYRFGVLARIVRHMRARHQDGDDHPLSLE 453
+GSS Y+FGVLA+IV +M+ RHQ GD HPL+L+
Sbjct: 68 SGSSGYKFGVLAKIVNYMKTRHQRGDTHPLTLD 100
>AF292062-1|AAG39077.1| 291|Homo sapiens general transcription
factor protein.
Length = 291
Score = 68.5 bits (160), Expect = 3e-11
Identities = 37/83 (44%), Positives = 47/83 (56%)
Frame = +2
Query: 452 NEILDETNQLDVGNKIKQWLQTEALQSNPKIECSPDGKFNFKPVYXXXXXXXXXXXXXXX 631
+EILDET LD+G K KQWL TEAL +NPKIE DGK+ FKP Y
Sbjct: 100 DEILDETQHLDIGLKQKQWLMTEALVNNPKIEVI-DGKYAFKPKYXVRDKKALLRLLDQH 158
Query: 632 XXXXXXXXXXEDVQESLPHCERA 700
ED++E+LP+ ++A
Sbjct: 159 DQRGLGGILLEDIEEALPNXQKA 181
Score = 54.8 bits (126), Expect = 4e-07
Identities = 33/93 (35%), Positives = 44/93 (47%), Gaps = 7/93 (7%)
Frame = +1
Query: 196 KREAFKKXALATPSIEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAS-------NYKTM 354
+RE FKK AL+TP +E S N K +
Sbjct: 8 ERELFKKRALSTPVVEKRSASSESSSSSSKKKKTKVEHGGSSGSKENSDHSNGSFNLKAL 67
Query: 355 TGSSSYRFGVLARIVRHMRARHQDGDDHPLSLE 453
+GSS Y+FGVLA+IV +M+ RHQ G HPL+L+
Sbjct: 68 SGSSGYKFGVLAKIVNYMKTRHQRGXTHPLTLD 100
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,424,464
Number of Sequences: 237096
Number of extensions: 1635976
Number of successful extensions: 9965
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9957
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11381686510
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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