Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_I17
         (889 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40952-11|AAA81744.2|  280|Caenorhabditis elegans Hypothetical p...    32   0.48 
AF125457-1|AAD12831.1|  108|Caenorhabditis elegans Hypothetical ...    29   5.9  
Z66513-7|CAA91336.2|  289|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Y08815-1|CAA70049.1|  289|Caenorhabditis elegans TFIIE-beta prot...    28   7.8  

>U40952-11|AAA81744.2|  280|Caenorhabditis elegans Hypothetical
           protein C03B1.2 protein.
          Length = 280

 Score = 32.3 bits (70), Expect = 0.48
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +3

Query: 597 IKNLY*GYLSNKTSKAWEVYYWKMFKSRCLTAREPNLPELF 719
           +KNL    L+ K SK + V Y K  K   +T  EPN+ +LF
Sbjct: 4   LKNLSKMLLAGKISKYYRVKYLKFCKLVSVTTAEPNMEQLF 44


>AF125457-1|AAD12831.1|  108|Caenorhabditis elegans Hypothetical
           protein Y50F7A.2 protein.
          Length = 108

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 573 KLNFPSGEHSILGLLCRASVCSHCFILFPT 484
           K+  P+GE    G++CR +  S+C  + PT
Sbjct: 8   KVPVPTGEKFFTGIICRWASSSNCPFILPT 37


>Z66513-7|CAA91336.2|  289|Caenorhabditis elegans Hypothetical
           protein F54D5.11 protein.
          Length = 289

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +1

Query: 361 SSSYRFGVLARIVRHMRARHQDGDDHPLSLE 453
           S++  F  +A+IV +M+ RH +    PL+L+
Sbjct: 72  SNATNFSTMAKIVDYMKKRHLNNQQWPLTLQ 102


>Y08815-1|CAA70049.1|  289|Caenorhabditis elegans TFIIE-beta protein
           protein.
          Length = 289

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +1

Query: 361 SSSYRFGVLARIVRHMRARHQDGDDHPLSLE 453
           S++  F  +A+IV +M+ RH +    PL+L+
Sbjct: 72  SNATNFSTMAKIVDYMKKRHLNNQQWPLTLQ 102


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,015,835
Number of Sequences: 27780
Number of extensions: 246732
Number of successful extensions: 484
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)