Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_I14
         (860 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0038 + 437738-438122,439215-439501,440111-440375,440687-44...    30   2.7  
03_06_0175 + 32152428-32153423,32153692-32153889,32154942-321551...    29   6.3  
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343     29   6.3  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   8.3  
08_02_0514 + 18021365-18022527,18023489-18023660                       28   8.3  
07_01_1201 - 11419851-11419913,11420090-11420311                       28   8.3  

>10_01_0038 +
           437738-438122,439215-439501,440111-440375,440687-440784
          Length = 344

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 28/88 (31%), Positives = 36/88 (40%)
 Frame = -2

Query: 649 RAHEGSFQGETPGIFIVLSGFATSDLSVDFCDARQGGGAYGKTPATRPFYGSWPFAGLLL 470
           R H+  F G   G    L G +   LS      R GGG     P+TR   G     G + 
Sbjct: 213 RGHDTVFDGVYVGRRWRLGGGSDGVLSSARSGGRGGGGDDSALPSTRS-GGKGDSGGSVA 271

Query: 469 TCSFLRYPLILWITVLPPLSELIPLAAA 386
           T S  R  +     + PPLS LI +A +
Sbjct: 272 TASPHRLQMAGNPRLSPPLSPLISIAGS 299


>03_06_0175 +
           32152428-32153423,32153692-32153889,32154942-32155121,
           32156224-32156481,32157310-32157381
          Length = 567

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 611 TRRFPLEAPLVRSPVPTLPLXRILSAFLPSGSVALXH 721
           +RR PL  P V SP+ T+    + +A    G+ A+ H
Sbjct: 51  SRRIPLSIPCVASPMDTVSEAAMAAAMASLGAAAVVH 87


>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
          Length = 356

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = +2

Query: 347 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 502
           P PRS  RC      GCG R Q TQR     P N  IT   E TC   ++  P  +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +2

Query: 296 NESAN---ARGEAVCVLGALPLPRSLTRCAR 379
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


>08_02_0514 + 18021365-18022527,18023489-18023660
          Length = 444

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 19/38 (50%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = +2

Query: 554 ITKID--AQVRGGE-TRQDYKDTRRFPLEAPLVRSPVP 658
           ITKID  A V GG+ T Q     RR PL A +  SP+P
Sbjct: 396 ITKIDPAASVVGGKLTWQTAARPRRLPLSAKITFSPLP 433


>07_01_1201 - 11419851-11419913,11420090-11420311
          Length = 94

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = +1

Query: 535 LRPPDEHHKNRRSSQRWRN--PTGL*RYQAFPPGSSPRALSCSDPAAXPDTVRLSP 696
           L PP          Q+WR+  PTG   + +FP G+ P A     PA  PD    +P
Sbjct: 13  LLPPPPPLPALPQGQQWRSTGPTGKLCFCSFPAGALPPAAGAGQPA--PDRQPATP 66


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,605,168
Number of Sequences: 37544
Number of extensions: 430197
Number of successful extensions: 1296
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1296
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)