Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_I12
(915 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein L23|Schizosac... 191 1e-49
SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein L23|Schizosacc... 191 1e-49
SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit L38|... 43 7e-05
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 31 0.17
SPAC1002.17c |urg2||uracil phosphoribosyltransferase |Schizosacc... 26 6.5
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate... 26 6.5
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 26 8.6
>SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein
L23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 139
Score = 191 bits (465), Expect = 1e-49
Identities = 84/116 (72%), Positives = 105/116 (90%)
Frame = +2
Query: 80 RGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVA 259
RGRG ++G K+R++LGLPV A++NCADN+GAKNLY+++V G RLNRLPAA GDM++A
Sbjct: 3 RGRGAASGTKYRMTLGLPVQAIMNCADNSGAKNLYIVSVFGTGARLNRLPAASCGDMVLA 62
Query: 260 TVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITG 427
TVKKGKP+LRKK+MPA+V+RQRK +RR+DGV++YFEDNAGVIVN KGEMKGSAITG
Sbjct: 63 TVKKGKPDLRKKIMPAIVVRQRKAWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITG 118
Score = 35.1 bits (77), Expect = 0.014
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 426 GPVAKECADLWPR 464
GPVAKECADLWPR
Sbjct: 118 GPVAKECADLWPR 130
>SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein
L23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 139
Score = 191 bits (465), Expect = 1e-49
Identities = 84/116 (72%), Positives = 105/116 (90%)
Frame = +2
Query: 80 RGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVA 259
RGRG ++G K+R++LGLPV A++NCADN+GAKNLY+++V G RLNRLPAA GDM++A
Sbjct: 3 RGRGAASGTKYRMTLGLPVQAIMNCADNSGAKNLYIVSVFGTGARLNRLPAASCGDMVLA 62
Query: 260 TVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITG 427
TVKKGKP+LRKK+MPA+V+RQRK +RR+DGV++YFEDNAGVIVN KGEMKGSAITG
Sbjct: 63 TVKKGKPDLRKKIMPAIVVRQRKAWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITG 118
Score = 35.1 bits (77), Expect = 0.014
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 426 GPVAKECADLWPR 464
GPVAKECADLWPR
Sbjct: 118 GPVAKECADLWPR 130
>SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit
L38|Schizosaccharomyces pombe|chr 2|||Manual
Length = 126
Score = 42.7 bits (96), Expect = 7e-05
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 9/72 (12%)
Frame = +2
Query: 233 AGSGDMIVATVKKGKPEL---------RKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVI 385
A GD +V VKK + R + A+++R + P RR DG ++ F+DNA V+
Sbjct: 31 ASLGDEVVVVVKKARSGSSVTAANKVKRGDIHHAIIVRTKSPVRRPDGRYVRFDDNACVL 90
Query: 386 VNNKGEMKGSAI 421
VN + E G+ I
Sbjct: 91 VNKECEPLGTRI 102
>SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 886
Score = 31.5 bits (68), Expect = 0.17
Identities = 27/120 (22%), Positives = 48/120 (40%), Gaps = 2/120 (1%)
Frame = -1
Query: 477 RLRQYAATDQHILWLQXPVMAEPFISPLLLT--MTPALSSKYINTPSRLLNGFRCLMTTA 304
RL + + + W + F+ ++ + ALSS+Y S L +T
Sbjct: 744 RLLTFQTNPEELEWQLFLDDTQAFVKSIIAVANLAKALSSEYTFQKSVLAGLSAATRSTK 803
Query: 303 GITFFRSSGLPFLTVATIMSPEPAAGSLFRRPLIPWTAITYRFFAPVLSAQLITAPTGRP 124
+T SS T +++ +P P + R P P +A A +++ LI +P P
Sbjct: 804 DLTILLSSSARHYTESSLATPVPLMSPIARVPATPLSA-ALGSAAQSITSPLIMSPAAIP 862
>SPAC1002.17c |urg2||uracil phosphoribosyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 189
Score = 26.2 bits (55), Expect = 6.5
Identities = 16/70 (22%), Positives = 28/70 (40%)
Frame = +2
Query: 62 YNKMSKRGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGS 241
YNK+ K+ + ++ G AVI G KN+ ++V + L R
Sbjct: 96 YNKLPKKSTDTAVILDPVMATGGTANAVITTLQEWGCKNIIFVSVLASEQALTRFSNIPG 155
Query: 242 GDMIVATVKK 271
+ ++ V K
Sbjct: 156 VEFVIGAVDK 165
>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
transferase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 453
Score = 26.2 bits (55), Expect = 6.5
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Frame = +2
Query: 266 KKGKPELRKKVMPAVVIRQRK---PFRRRDGVFIYFEDNA 376
KKG P RK P+++ PF RD +FI E NA
Sbjct: 337 KKGAPVFRKH-FPSILQELNSLDPPFYERDAIFIVDEGNA 375
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 25.8 bits (54), Expect = 8.6
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = -1
Query: 414 EPFISPLLLTMTPALSSKYINTPS 343
+P+ P+L + P L Y++ PS
Sbjct: 275 QPYSGPILASTAPTLDGSYLSNPS 298
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,181,086
Number of Sequences: 5004
Number of extensions: 45885
Number of successful extensions: 120
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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