Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_I12
(915 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0319 - 16712572-16712654,16712756-16712797,16713955-167142... 215 5e-56
03_01_0276 + 2124538-2124550,2124678-2124962,2126813-2126854,212... 215 5e-56
02_05_1201 + 34929577-34929589,34930252-34930587,34931378-349314... 207 1e-53
12_02_1115 - 26173351-26173725,26174241-26174344,26174812-26174845 60 2e-09
04_04_1586 - 34621945-34623366 29 3.9
03_06_0296 + 32901696-32901892,32901989-32902232,32903992-329041... 29 6.8
02_02_0500 - 10993675-10994067,10994434-10995738 29 6.8
08_02_1367 + 26432425-26432622,26434071-26434162,26434337-264344... 28 9.0
03_05_0446 - 24414351-24414427,24414491-24414881 28 9.0
03_02_0027 + 5100865-5100878,5102241-5102708,5102795-5103021,510... 28 9.0
01_07_0090 - 41003888-41004716,41005142-41005559,41007010-41007193 28 9.0
>10_08_0319 -
16712572-16712654,16712756-16712797,16713955-16714239,
16714346-16714358
Length = 140
Score = 215 bits (524), Expect = 5e-56
Identities = 98/119 (82%), Positives = 113/119 (94%)
Frame = +2
Query: 71 MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDM 250
MSKRGRGGSAG KFR+SLGLPV A +NCADNTGAKNLY+I+V+GIKGRLNRLP+A GDM
Sbjct: 1 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
Query: 251 IVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITG 427
++ATVKKGKP+LRKKVMPAV++RQRKP+RR+DGV++YFEDNAGVIVN KGEMKGSAITG
Sbjct: 61 VMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVYMYFEDNAGVIVNPKGEMKGSAITG 119
Score = 33.1 bits (72), Expect = 0.32
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +3
Query: 426 GPVAKECADLWPR 464
GP+ KECADLWPR
Sbjct: 119 GPIGKECADLWPR 131
>03_01_0276 +
2124538-2124550,2124678-2124962,2126813-2126854,
2126943-2127025
Length = 140
Score = 215 bits (524), Expect = 5e-56
Identities = 98/119 (82%), Positives = 113/119 (94%)
Frame = +2
Query: 71 MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDM 250
MSKRGRGGSAG KFR+SLGLPV A +NCADNTGAKNLY+I+V+GIKGRLNRLP+A GDM
Sbjct: 1 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
Query: 251 IVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITG 427
++ATVKKGKP+LRKKVMPAV++RQRKP+RR+DGV++YFEDNAGVIVN KGEMKGSAITG
Sbjct: 61 VMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVYMYFEDNAGVIVNPKGEMKGSAITG 119
Score = 33.1 bits (72), Expect = 0.32
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +3
Query: 426 GPVAKECADLWPR 464
GP+ KECADLWPR
Sbjct: 119 GPIGKECADLWPR 131
>02_05_1201 +
34929577-34929589,34930252-34930587,34931378-34931419,
34931630-34931712
Length = 157
Score = 207 bits (505), Expect = 1e-53
Identities = 94/115 (81%), Positives = 109/115 (94%)
Frame = +2
Query: 83 GRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVAT 262
GRGGSAG KFR+SLGLPV A +NCADNTGAKNLY+I+V+GIKGRLNRLP+A GDM++AT
Sbjct: 22 GRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMAT 81
Query: 263 VKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITG 427
VKKGKP+LRKKVMPAV++RQRKP+RR+DGV++YFEDNAGVIVN KGEMKGSAITG
Sbjct: 82 VKKGKPDLRKKVMPAVIVRQRKPWRRKDGVYMYFEDNAGVIVNPKGEMKGSAITG 136
Score = 33.1 bits (72), Expect = 0.32
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +3
Query: 426 GPVAKECADLWPR 464
GP+ KECADLWPR
Sbjct: 136 GPIGKECADLWPR 148
>12_02_1115 - 26173351-26173725,26174241-26174344,26174812-26174845
Length = 170
Score = 60.5 bits (140), Expect = 2e-09
Identities = 37/97 (38%), Positives = 56/97 (57%), Gaps = 3/97 (3%)
Frame = +2
Query: 146 INCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKK---VMPAVVI 316
+ DN+GAK V+ +Q ++G+ A GD I+ +VK+ +P + K V+ VV+
Sbjct: 58 LKVVDNSGAKR--VMCIQSLRGK----KGARLGDTIIGSVKEAQPRGKVKKGDVVYGVVV 111
Query: 317 RQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITG 427
R R DG I F+DNA V+VNNKGE+ G+ + G
Sbjct: 112 RAAMKRGRNDGSEIQFDDNAIVLVNNKGELIGTRVFG 148
>04_04_1586 - 34621945-34623366
Length = 473
Score = 29.5 bits (63), Expect = 3.9
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +2
Query: 71 MSKRGRGGSAGAKFRISLGLPVGAV-INCADNTGAKNLYVIAVQGIKGRLNRLPAAGS 241
++ RG GG+ + +PVGAV + N A + Y + + GI RLP S
Sbjct: 282 LASRGAGGAGSLVLGRTEAVPVGAVWVPLVRNNQASSFYYVGLTGIGVGGERLPLQDS 339
>03_06_0296 +
32901696-32901892,32901989-32902232,32903992-32904112,
32904219-32904406
Length = 249
Score = 28.7 bits (61), Expect = 6.8
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -3
Query: 382 DTRIVLKVYKYSITPSERFPLPDDHCRHYLFPEFRFTLFDCGHNHV 245
+ I+++ Y+ T +R P P D + +F F L+DC +N V
Sbjct: 101 EINIIIEAYR---TLRDRGPYPADQVVRDINGKFAFVLYDCSNNSV 143
>02_02_0500 - 10993675-10994067,10994434-10995738
Length = 565
Score = 28.7 bits (61), Expect = 6.8
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Frame = -1
Query: 426 PVMAEPFISPLLLTMTPALSSKYINTPSRLLNGFRCLMTT---AGITFFR-SSGLPFLTV 259
P EP I+ + ++PA+ +T S + NG+ +M+T G+ F + SSG + V
Sbjct: 225 PAPVEPIIANGKVKLSPAVMEMIYSTISGIENGYLPVMSTEGSGGVYFMKDSSGESNVAV 284
Query: 258 ATIMSPEPAA 229
+ EP A
Sbjct: 285 FKPIDEEPMA 294
>08_02_1367 +
26432425-26432622,26434071-26434162,26434337-26434403,
26434519-26434638,26434792-26435023,26435525-26435606,
26435985-26436117,26436332-26436537,26436633-26436758,
26437208-26437907
Length = 651
Score = 28.3 bits (60), Expect = 9.0
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = -3
Query: 283 FRFTLFDCGHNHVPGTGRRQSVQATFDTLDSDHIQILCPCVVGAVDYCSHW 131
FRF + D H+ GT + + ++ T+D H L + Y S+W
Sbjct: 455 FRFCIADSEHDWREGTDQYKFIEQCLSTVDRKHQPWLIFAAHRVLGYSSNW 505
>03_05_0446 - 24414351-24414427,24414491-24414881
Length = 155
Score = 28.3 bits (60), Expect = 9.0
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -3
Query: 148 DYCSHWETQGDTEFRSRGTTTSSLRHFVVSKILKS 44
D C + + D FR+RG T++SLR V+ ++S
Sbjct: 56 DDCEYGDHDDDRGFRARGFTSASLRSNVIEGEVRS 90
>03_02_0027 +
5100865-5100878,5102241-5102708,5102795-5103021,
5103670-5104577
Length = 538
Score = 28.3 bits (60), Expect = 9.0
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -1
Query: 171 APVLSAQLITAPTGRPREIRNFAPAEPPRP 82
AP S+ L TAP P + + FAP PP P
Sbjct: 328 APNASSSLFTAPV--PADRQQFAPPPPPSP 355
>01_07_0090 - 41003888-41004716,41005142-41005559,41007010-41007193
Length = 476
Score = 28.3 bits (60), Expect = 9.0
Identities = 17/49 (34%), Positives = 21/49 (42%)
Frame = +2
Query: 92 GSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAG 238
GSA A + L A + +TG GI G L+RLPA G
Sbjct: 327 GSAAAIMSATALLQKAAELGATTSTGCYGGVAFPAMGIAGGLDRLPAIG 375
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,100,070
Number of Sequences: 37544
Number of extensions: 350499
Number of successful extensions: 1218
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1218
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2600672280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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