Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_I10
         (890 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4H387 Cluster: Low density lipoprotein receptor-relate...    36   1.8  

>UniRef50_Q4H387 Cluster: Low density lipoprotein receptor-related
           protein; n=1; Ciona intestinalis|Rep: Low density
           lipoprotein receptor-related protein - Ciona
           intestinalis (Transparent sea squirt)
          Length = 898

 Score = 35.5 bits (78), Expect = 1.8
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +2

Query: 182 GNRSYAL-SGNSHYQCCARLTHGNHQYAFSSQRPPPNTRCTVST 310
           G+R Y+  SG SH++C     H   Q+ +    PPP T C   T
Sbjct: 650 GDRVYSTDSGRSHHRCKNGYKHRRSQHRYPIHHPPPPTPCNTDT 693


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 607,142,294
Number of Sequences: 1657284
Number of extensions: 10036442
Number of successful extensions: 23702
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 19604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23492
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 80342087756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)