Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_I07
         (1282 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    36   0.016
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    34   0.049
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po...    30   0.79 
SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subun...    27   7.4  
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb...    26   9.7  

>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 35.5 bits (78), Expect = 0.016
 Identities = 29/137 (21%), Positives = 54/137 (39%)
 Frame = -1

Query: 484 KKXXEXKXKXKRXXXEXXXXEXKKERXXKGKXRNKKEXXQKXXRXEXXXREKXXREEXXK 305
           K   E + K KR   E    E ++    + + + K+E  +K  R      EK  RE   K
Sbjct: 576 KAKREAEEKAKREAEEKAKREAEENAKREAEEKAKREAEEKAKREA---EEKAKREAEEK 632

Query: 304 ARXXKXRKEGXEXKXRDRXKXXGEXXXXXKGRXXXKKEEXEGXRXARXKXTEXEKXKRNX 125
           A+  +  +E  + +  ++ K   E     +     K+E  E  +    +  + E  ++  
Sbjct: 633 AK--REAEEKAKREAEEKAKREAEEKAKREAEENAKREAEEKAKREAEENAKREAEEKVK 690

Query: 124 REXXKGRKKKXXXXEKK 74
           RE  +  K+K     K+
Sbjct: 691 RETEENAKRKAEEEGKR 707


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 33.9 bits (74), Expect = 0.049
 Identities = 21/97 (21%), Positives = 40/97 (41%)
 Frame = -1

Query: 541 KKKKKRXXXGGXXXEKXXXKKXXEXKXKXKRXXXEXXXXEXKKERXXKGKXRNKKEXXQK 362
           K++++R        ++   ++  E K K K    +    + + +R    + +  +E  +K
Sbjct: 640 KREEQRLKREQEKKQQELERQKREEKQKQKEREKKLKKQQQEADREKMAREQRLREEEEK 699

Query: 361 XXRXEXXXREKXXREEXXKARXXKXRKEGXEXKXRDR 251
               E   REK  +EE  + R     KE  E + R R
Sbjct: 700 RILEERKRREKLDKEEEERRRRELLEKESEEKERRLR 736


>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 284

 Score = 29.9 bits (64), Expect = 0.79
 Identities = 17/47 (36%), Positives = 19/47 (40%)
 Frame = -2

Query: 1275 KKXAGXGXKKKKXXXKKKXXXXGKKKKKXXXKXXXKKKKRXNXKKXP 1135
            KK      KKKK   KK      KK+K        KKKK+   K  P
Sbjct: 190  KKLEKITKKKKKEHKKKDKESSSKKRKSGSSDKEEKKKKKIKLKDKP 236


>SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subunit
            Rpa34 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 251

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 1248 KKKXXXKKKXXXXGKKKKKXXXKXXXKKKKRXNXKK 1141
            + K   K+K    GK++KK   +   KKK++ + KK
Sbjct: 213  QNKGKEKQKELKKGKREKKDEEEKPKKKKQKKSSKK 248


>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 508

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = -2

Query: 1281 KTKKXAGXGXKKKKXXXKKKXXXXGKKKKKXXXKXXXKKKKRXNXK 1144
            K K+  G   KK+K   K K     K+K +        KKK+ + K
Sbjct: 460  KLKEADGESSKKEKKEKKDKKHKKSKRKSEESEDGESPKKKKKSKK 505


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,787,158
Number of Sequences: 5004
Number of extensions: 17158
Number of successful extensions: 59
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 697499478
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)