Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_I05
         (882 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31E1.03 |hub1|ubl4|ubiquitin-like protein modifier Hub1|Schi...   128   1e-30
SPAC959.06c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   8.2  
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M...    26   8.2  

>SPBC31E1.03 |hub1|ubl4|ubiquitin-like protein modifier
           Hub1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 73

 Score =  128 bits (309), Expect = 1e-30
 Identities = 57/72 (79%), Positives = 65/72 (90%)
 Frame = +2

Query: 158 MLEVTCNDRLGKKVRVKCNPDDTVGDLKKLIAAQTGTRYDKIVLKKWYTVFKDHIKLADY 337
           M+EV CNDRLGKKVRVKC PDDTVGD KKL+AAQTGT   +IVLKKW++VFKD+I LADY
Sbjct: 1   MIEVLCNDRLGKKVRVKCMPDDTVGDFKKLVAAQTGTDPRRIVLKKWHSVFKDNITLADY 60

Query: 338 EIHDGMNLELYY 373
           EIHDGM+LE+YY
Sbjct: 61  EIHDGMSLEMYY 72


>SPAC959.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 225

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -2

Query: 260 FVRLLTSLNHPRY 222
           FV+ +TSLNHP Y
Sbjct: 87  FVKYITSLNHPEY 99


>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 663

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +2

Query: 194 KVRVKCNPDDTVGDLKKLIAAQTGTRYDKIVLKKWYTVFKDHI 322
           K +   NP++T+ D+K+LI    G ++D+  + K    F  HI
Sbjct: 87  KNQAPSNPENTIFDIKRLI----GRKFDEKTMAKDIKSFPFHI 125


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,222,279
Number of Sequences: 5004
Number of extensions: 33962
Number of successful extensions: 89
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)