Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_I05
(882 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT007355-1|AAP36019.1| 73|Homo sapiens ubiquitin-like 5 protein. 146 7e-35
BC110839-1|AAI10840.1| 73|Homo sapiens ubiquitin-like 5 protein. 146 7e-35
BC007053-1|AAH07053.1| 73|Homo sapiens UBL5 protein protein. 146 7e-35
AF313915-1|AAK14178.1| 73|Homo sapiens ubiquitin-like 5 protei... 146 7e-35
X17568-1|CAB57868.1| 240|Homo sapiens snRNP B' protein protein. 32 2.4
X17567-1|CAB57867.1| 231|Homo sapiens snRNP B protein protein. 32 2.4
X15893-1|CAA33902.1| 231|Homo sapiens protein ( Human B cod gen... 32 2.4
M34082-1|AAA36579.1| 233|Homo sapiens protein ( Human small nuc... 32 2.4
M34081-1|AAA36578.1| 224|Homo sapiens protein ( Human small nuc... 32 2.4
CR456969-1|CAG33250.1| 240|Homo sapiens SNRPB protein. 32 2.4
BC080516-1|AAH80516.1| 231|Homo sapiens small nuclear ribonucle... 32 2.4
BC003530-1|AAH03530.1| 234|Homo sapiens SNRPB protein protein. 32 2.4
AY742712-1|AAU89981.1| 231|Homo sapiens small nuclear ribonucle... 32 2.4
AL049650-8|CAB46715.1| 240|Homo sapiens small nuclear ribonucle... 32 2.4
AL049650-7|CAB46714.1| 231|Homo sapiens small nuclear ribonucle... 32 2.4
M13058-1|AAA98808.1| 166|Homo sapiens proline-rich protein 2 pr... 32 3.2
M13057-1|AAA98807.1| 166|Homo sapiens proline-rich protein 1 pr... 32 3.2
K03203-1|AAA60184.1| 166|Homo sapiens PRH1 protein. 32 3.2
K03202-1|AAA60183.1| 166|Homo sapiens PRH2 protein. 32 3.2
BX641094-1|CAE46044.1| 166|Homo sapiens hypothetical protein pr... 32 3.2
BC141916-1|AAI41917.1| 170|Homo sapiens PRH2 protein protein. 32 3.2
BC133676-1|AAI33677.1| 166|Homo sapiens proline-rich protein Ha... 32 3.2
BC128192-1|AAI28193.1| 171|Homo sapiens PRH1 protein protein. 32 3.2
BC095488-1|AAH95488.1| 166|Homo sapiens PRH2 protein protein. 32 3.2
BC064553-1|AAH64553.1| 187|Homo sapiens PRH1 protein protein. 32 3.2
X16163-1|CAA34288.1| 218|Homo sapiens SmB /B' autoimmune antige... 31 7.3
X15892-1|CAA33901.1| 240|Homo sapiens protein ( Human hcerN3 ge... 31 7.3
U41303-1|AAA98969.1| 240|Homo sapiens small nuclear ribonuleopr... 31 7.3
J04615-1|AAA36617.1| 240|Homo sapiens protein ( Human lupus aut... 31 7.3
CR450350-1|CAG29346.1| 240|Homo sapiens SNRPN protein. 31 7.3
BC025178-1|AAH25178.1| 240|Homo sapiens small nuclear ribonucle... 31 7.3
BC024777-1|AAH24777.1| 240|Homo sapiens SNURF protein protein. 31 7.3
BC003180-1|AAH03180.1| 240|Homo sapiens small nuclear ribonucle... 31 7.3
BC000611-1|AAH00611.1| 240|Homo sapiens SNRPN protein protein. 31 7.3
AK222633-1|BAD96353.1| 240|Homo sapiens small nuclear ribonucle... 31 7.3
AF400432-1|AAK92481.1| 240|Homo sapiens small nuclear ribonucle... 31 7.3
>BT007355-1|AAP36019.1| 73|Homo sapiens ubiquitin-like 5 protein.
Length = 73
Score = 146 bits (355), Expect = 7e-35
Identities = 63/73 (86%), Positives = 69/73 (94%)
Frame = +2
Query: 158 MLEVTCNDRLGKKVRVKCNPDDTVGDLKKLIAAQTGTRYDKIVLKKWYTVFKDHIKLADY 337
M+EV CNDRLGKKVRVKCN DDT+GDLKKLIAAQTGTR++KIVLKKWYT+FKDH+ L DY
Sbjct: 1 MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDY 60
Query: 338 EIHDGMNLELYYQ 376
EIHDGMNLELYYQ
Sbjct: 61 EIHDGMNLELYYQ 73
>BC110839-1|AAI10840.1| 73|Homo sapiens ubiquitin-like 5 protein.
Length = 73
Score = 146 bits (355), Expect = 7e-35
Identities = 63/73 (86%), Positives = 69/73 (94%)
Frame = +2
Query: 158 MLEVTCNDRLGKKVRVKCNPDDTVGDLKKLIAAQTGTRYDKIVLKKWYTVFKDHIKLADY 337
M+EV CNDRLGKKVRVKCN DDT+GDLKKLIAAQTGTR++KIVLKKWYT+FKDH+ L DY
Sbjct: 1 MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDY 60
Query: 338 EIHDGMNLELYYQ 376
EIHDGMNLELYYQ
Sbjct: 61 EIHDGMNLELYYQ 73
>BC007053-1|AAH07053.1| 73|Homo sapiens UBL5 protein protein.
Length = 73
Score = 146 bits (355), Expect = 7e-35
Identities = 63/73 (86%), Positives = 69/73 (94%)
Frame = +2
Query: 158 MLEVTCNDRLGKKVRVKCNPDDTVGDLKKLIAAQTGTRYDKIVLKKWYTVFKDHIKLADY 337
M+EV CNDRLGKKVRVKCN DDT+GDLKKLIAAQTGTR++KIVLKKWYT+FKDH+ L DY
Sbjct: 1 MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDY 60
Query: 338 EIHDGMNLELYYQ 376
EIHDGMNLELYYQ
Sbjct: 61 EIHDGMNLELYYQ 73
>AF313915-1|AAK14178.1| 73|Homo sapiens ubiquitin-like 5 protein
protein.
Length = 73
Score = 146 bits (355), Expect = 7e-35
Identities = 63/73 (86%), Positives = 69/73 (94%)
Frame = +2
Query: 158 MLEVTCNDRLGKKVRVKCNPDDTVGDLKKLIAAQTGTRYDKIVLKKWYTVFKDHIKLADY 337
M+EV CNDRLGKKVRVKCN DDT+GDLKKLIAAQTGTR++KIVLKKWYT+FKDH+ L DY
Sbjct: 1 MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDY 60
Query: 338 EIHDGMNLELYYQ 376
EIHDGMNLELYYQ
Sbjct: 61 EIHDGMNLELYYQ 73
>X17568-1|CAB57868.1| 240|Homo sapiens snRNP B' protein protein.
Length = 240
Score = 32.3 bits (70), Expect = 2.4
Identities = 21/75 (28%), Positives = 27/75 (36%)
Frame = +1
Query: 637 PFXXPGPGXGXGGFSXXIXXATPRGKGXXLXGPLXVPXSLTPXPRXFXWGXXXSXPPKGG 816
P GP G GG S + TP+G+G S+ P + G PP G
Sbjct: 124 PAGLAGPVRGVGGPSQQVM--TPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGR 181
Query: 817 XXFPPXXGGXTXGKK 861
PP G G +
Sbjct: 182 GAPPPGMMGPPPGMR 196
>X17567-1|CAB57867.1| 231|Homo sapiens snRNP B protein protein.
Length = 231
Score = 32.3 bits (70), Expect = 2.4
Identities = 21/75 (28%), Positives = 27/75 (36%)
Frame = +1
Query: 637 PFXXPGPGXGXGGFSXXIXXATPRGKGXXLXGPLXVPXSLTPXPRXFXWGXXXSXPPKGG 816
P GP G GG S + TP+G+G S+ P + G PP G
Sbjct: 124 PAGLAGPVRGVGGPSQQVM--TPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGR 181
Query: 817 XXFPPXXGGXTXGKK 861
PP G G +
Sbjct: 182 GAPPPGMMGPPPGMR 196
>X15893-1|CAA33902.1| 231|Homo sapiens protein ( Human B cod gene
for B/B' snRNP associated protein. ).
Length = 231
Score = 32.3 bits (70), Expect = 2.4
Identities = 21/75 (28%), Positives = 27/75 (36%)
Frame = +1
Query: 637 PFXXPGPGXGXGGFSXXIXXATPRGKGXXLXGPLXVPXSLTPXPRXFXWGXXXSXPPKGG 816
P GP G GG S + TP+G+G S+ P + G PP G
Sbjct: 124 PAGLAGPVRGVGGPSQQVM--TPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGR 181
Query: 817 XXFPPXXGGXTXGKK 861
PP G G +
Sbjct: 182 GAPPPGMMGPPPGMR 196
>M34082-1|AAA36579.1| 233|Homo sapiens protein ( Human small
nuclear ribonucleoprotein particle SmB' mRNA, 3' end. ).
Length = 233
Score = 32.3 bits (70), Expect = 2.4
Identities = 21/75 (28%), Positives = 27/75 (36%)
Frame = +1
Query: 637 PFXXPGPGXGXGGFSXXIXXATPRGKGXXLXGPLXVPXSLTPXPRXFXWGXXXSXPPKGG 816
P GP G GG S + TP+G+G S+ P + G PP G
Sbjct: 117 PAGLAGPVRGVGGPSQQVM--TPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGR 174
Query: 817 XXFPPXXGGXTXGKK 861
PP G G +
Sbjct: 175 GAPPPGMMGPPPGMR 189
>M34081-1|AAA36578.1| 224|Homo sapiens protein ( Human small
nuclear ribonucleoprotein particle SmB mRNA, 3' end. ).
Length = 224
Score = 32.3 bits (70), Expect = 2.4
Identities = 21/75 (28%), Positives = 27/75 (36%)
Frame = +1
Query: 637 PFXXPGPGXGXGGFSXXIXXATPRGKGXXLXGPLXVPXSLTPXPRXFXWGXXXSXPPKGG 816
P GP G GG S + TP+G+G S+ P + G PP G
Sbjct: 117 PAGLAGPVRGVGGPSQQVM--TPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGR 174
Query: 817 XXFPPXXGGXTXGKK 861
PP G G +
Sbjct: 175 GAPPPGMMGPPPGMR 189
>CR456969-1|CAG33250.1| 240|Homo sapiens SNRPB protein.
Length = 240
Score = 32.3 bits (70), Expect = 2.4
Identities = 21/75 (28%), Positives = 27/75 (36%)
Frame = +1
Query: 637 PFXXPGPGXGXGGFSXXIXXATPRGKGXXLXGPLXVPXSLTPXPRXFXWGXXXSXPPKGG 816
P GP G GG S + TP+G+G S+ P + G PP G
Sbjct: 124 PAGLAGPVRGVGGPSQQVM--TPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGR 181
Query: 817 XXFPPXXGGXTXGKK 861
PP G G +
Sbjct: 182 GAPPPGMMGPPPGMR 196
>BC080516-1|AAH80516.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 231
Score = 32.3 bits (70), Expect = 2.4
Identities = 21/75 (28%), Positives = 27/75 (36%)
Frame = +1
Query: 637 PFXXPGPGXGXGGFSXXIXXATPRGKGXXLXGPLXVPXSLTPXPRXFXWGXXXSXPPKGG 816
P GP G GG S + TP+G+G S+ P + G PP G
Sbjct: 124 PAGLAGPVRGVGGPSQQVM--TPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGR 181
Query: 817 XXFPPXXGGXTXGKK 861
PP G G +
Sbjct: 182 GAPPPGMMGPPPGMR 196
>BC003530-1|AAH03530.1| 234|Homo sapiens SNRPB protein protein.
Length = 234
Score = 32.3 bits (70), Expect = 2.4
Identities = 21/75 (28%), Positives = 27/75 (36%)
Frame = +1
Query: 637 PFXXPGPGXGXGGFSXXIXXATPRGKGXXLXGPLXVPXSLTPXPRXFXWGXXXSXPPKGG 816
P GP G GG S + TP+G+G S+ P + G PP G
Sbjct: 124 PAGLAGPVRGVGGPSQQVM--TPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGR 181
Query: 817 XXFPPXXGGXTXGKK 861
PP G G +
Sbjct: 182 GAPPPGMMGPPPGMR 196
>AY742712-1|AAU89981.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptide B protein.
Length = 231
Score = 32.3 bits (70), Expect = 2.4
Identities = 21/75 (28%), Positives = 27/75 (36%)
Frame = +1
Query: 637 PFXXPGPGXGXGGFSXXIXXATPRGKGXXLXGPLXVPXSLTPXPRXFXWGXXXSXPPKGG 816
P GP G GG S + TP+G+G S+ P + G PP G
Sbjct: 124 PAGLAGPVRGVGGPSQQVM--TPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGR 181
Query: 817 XXFPPXXGGXTXGKK 861
PP G G +
Sbjct: 182 GAPPPGMMGPPPGMR 196
>AL049650-8|CAB46715.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 240
Score = 32.3 bits (70), Expect = 2.4
Identities = 21/75 (28%), Positives = 27/75 (36%)
Frame = +1
Query: 637 PFXXPGPGXGXGGFSXXIXXATPRGKGXXLXGPLXVPXSLTPXPRXFXWGXXXSXPPKGG 816
P GP G GG S + TP+G+G S+ P + G PP G
Sbjct: 124 PAGLAGPVRGVGGPSQQVM--TPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGR 181
Query: 817 XXFPPXXGGXTXGKK 861
PP G G +
Sbjct: 182 GAPPPGMMGPPPGMR 196
>AL049650-7|CAB46714.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 231
Score = 32.3 bits (70), Expect = 2.4
Identities = 21/75 (28%), Positives = 27/75 (36%)
Frame = +1
Query: 637 PFXXPGPGXGXGGFSXXIXXATPRGKGXXLXGPLXVPXSLTPXPRXFXWGXXXSXPPKGG 816
P GP G GG S + TP+G+G S+ P + G PP G
Sbjct: 124 PAGLAGPVRGVGGPSQQVM--TPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGR 181
Query: 817 XXFPPXXGGXTXGKK 861
PP G G +
Sbjct: 182 GAPPPGMMGPPPGMR 196
>M13058-1|AAA98808.1| 166|Homo sapiens proline-rich protein 2
protein.
Length = 166
Score = 31.9 bits (69), Expect = 3.2
Identities = 16/50 (32%), Positives = 20/50 (40%)
Frame = -1
Query: 849 GXPPXXWGKPXXPLXGXXXPXPPPEXPGXXXQ*XXNRKGPXKXXPFSPGG 700
G PP G+P P P PP P Q +++GP P P G
Sbjct: 99 GHPPPPQGRPQGPPQQGGHPRPPRGRPQGPPQQGGHQQGPPPPPPGKPQG 148
>M13057-1|AAA98807.1| 166|Homo sapiens proline-rich protein 1
protein.
Length = 166
Score = 31.9 bits (69), Expect = 3.2
Identities = 16/50 (32%), Positives = 20/50 (40%)
Frame = -1
Query: 849 GXPPXXWGKPXXPLXGXXXPXPPPEXPGXXXQ*XXNRKGPXKXXPFSPGG 700
G PP G+P P P PP P Q +++GP P P G
Sbjct: 99 GHPPPPQGRPQGPPQQGGHPRPPRGRPQGPPQQGGHQQGPPPPPPGKPQG 148
>K03203-1|AAA60184.1| 166|Homo sapiens PRH1 protein.
Length = 166
Score = 31.9 bits (69), Expect = 3.2
Identities = 16/50 (32%), Positives = 20/50 (40%)
Frame = -1
Query: 849 GXPPXXWGKPXXPLXGXXXPXPPPEXPGXXXQ*XXNRKGPXKXXPFSPGG 700
G PP G+P P P PP P Q +++GP P P G
Sbjct: 99 GHPPPPQGRPQGPPQQGGHPRPPRGRPQGPPQQGGHQQGPPPPPPGKPQG 148
>K03202-1|AAA60183.1| 166|Homo sapiens PRH2 protein.
Length = 166
Score = 31.9 bits (69), Expect = 3.2
Identities = 16/50 (32%), Positives = 20/50 (40%)
Frame = -1
Query: 849 GXPPXXWGKPXXPLXGXXXPXPPPEXPGXXXQ*XXNRKGPXKXXPFSPGG 700
G PP G+P P P PP P Q +++GP P P G
Sbjct: 99 GHPPPPQGRPQGPPQQGGHPRPPRGRPQGPPQQGGHQQGPPPPPPGKPQG 148
>BX641094-1|CAE46044.1| 166|Homo sapiens hypothetical protein
protein.
Length = 166
Score = 31.9 bits (69), Expect = 3.2
Identities = 16/50 (32%), Positives = 20/50 (40%)
Frame = -1
Query: 849 GXPPXXWGKPXXPLXGXXXPXPPPEXPGXXXQ*XXNRKGPXKXXPFSPGG 700
G PP G+P P P PP P Q +++GP P P G
Sbjct: 99 GHPPPPQGRPQGPPQQGGHPRPPRGRPQGPPQQGGHQQGPPPPPPGKPQG 148
>BC141916-1|AAI41917.1| 170|Homo sapiens PRH2 protein protein.
Length = 170
Score = 31.9 bits (69), Expect = 3.2
Identities = 16/50 (32%), Positives = 20/50 (40%)
Frame = -1
Query: 849 GXPPXXWGKPXXPLXGXXXPXPPPEXPGXXXQ*XXNRKGPXKXXPFSPGG 700
G PP G+P P P PP P Q +++GP P P G
Sbjct: 99 GHPPPPQGRPQGPPQQGGHPRPPRGRPQGPPQQGGHQQGPPPPPPGKPQG 148
>BC133676-1|AAI33677.1| 166|Homo sapiens proline-rich protein
HaeIII subfamily 1 protein.
Length = 166
Score = 31.9 bits (69), Expect = 3.2
Identities = 16/50 (32%), Positives = 20/50 (40%)
Frame = -1
Query: 849 GXPPXXWGKPXXPLXGXXXPXPPPEXPGXXXQ*XXNRKGPXKXXPFSPGG 700
G PP G+P P P PP P Q +++GP P P G
Sbjct: 99 GHPPPPQGRPQGPPQQGGHPRPPRGRPQGPPQQGGHQQGPPPPPPGKPQG 148
>BC128192-1|AAI28193.1| 171|Homo sapiens PRH1 protein protein.
Length = 171
Score = 31.9 bits (69), Expect = 3.2
Identities = 16/50 (32%), Positives = 20/50 (40%)
Frame = -1
Query: 849 GXPPXXWGKPXXPLXGXXXPXPPPEXPGXXXQ*XXNRKGPXKXXPFSPGG 700
G PP G+P P P PP P Q +++GP P P G
Sbjct: 99 GHPPPPQGRPQGPPQQGGHPRPPRGRPQGPPQQGGHQQGPPPPPPGKPQG 148
>BC095488-1|AAH95488.1| 166|Homo sapiens PRH2 protein protein.
Length = 166
Score = 31.9 bits (69), Expect = 3.2
Identities = 16/50 (32%), Positives = 20/50 (40%)
Frame = -1
Query: 849 GXPPXXWGKPXXPLXGXXXPXPPPEXPGXXXQ*XXNRKGPXKXXPFSPGG 700
G PP G+P P P PP P Q +++GP P P G
Sbjct: 99 GHPPPPQGRPQGPPQQGGHPRPPRGRPQGPPQQGGHQQGPPPPPPGKPQG 148
>BC064553-1|AAH64553.1| 187|Homo sapiens PRH1 protein protein.
Length = 187
Score = 31.9 bits (69), Expect = 3.2
Identities = 16/50 (32%), Positives = 20/50 (40%)
Frame = -1
Query: 849 GXPPXXWGKPXXPLXGXXXPXPPPEXPGXXXQ*XXNRKGPXKXXPFSPGG 700
G PP G+P P P PP P Q +++GP P P G
Sbjct: 120 GHPPPPQGRPQGPPQQGGHPRPPRGRPQGPPQQGGHQQGPPPPPPGKPQG 169
>X16163-1|CAA34288.1| 218|Homo sapiens SmB /B' autoimmune antigene
protein.
Length = 218
Score = 30.7 bits (66), Expect = 7.3
Identities = 19/65 (29%), Positives = 25/65 (38%)
Frame = +1
Query: 637 PFXXPGPGXGXGGFSXXIXXATPRGKGXXLXGPLXVPXSLTPXPRXFXWGXXXSXPPKGG 816
P GP G GG S + TP+G+G + S+ P + G PP G
Sbjct: 102 PAGLAGPVRGVGGPSQQVM--TPQGRGTVAAAAVAATASIAGAPTQYPPGRGTPPPPVGR 159
Query: 817 XXFPP 831
PP
Sbjct: 160 ATPPP 164
>X15892-1|CAA33901.1| 240|Homo sapiens protein ( Human hcerN3 gene
mRNA for N snRNP associated protein. ).
Length = 240
Score = 30.7 bits (66), Expect = 7.3
Identities = 19/65 (29%), Positives = 25/65 (38%)
Frame = +1
Query: 637 PFXXPGPGXGXGGFSXXIXXATPRGKGXXLXGPLXVPXSLTPXPRXFXWGXXXSXPPKGG 816
P GP G GG S + TP+G+G + S+ P + G PP G
Sbjct: 124 PAGLAGPVRGVGGPSQQVM--TPQGRGTVAAAAVAATASIAGAPTQYPPGRGTPPPPVGR 181
Query: 817 XXFPP 831
PP
Sbjct: 182 ATPPP 186
>U41303-1|AAA98969.1| 240|Homo sapiens small nuclear
ribonuleoprotein particle N protein.
Length = 240
Score = 30.7 bits (66), Expect = 7.3
Identities = 19/65 (29%), Positives = 25/65 (38%)
Frame = +1
Query: 637 PFXXPGPGXGXGGFSXXIXXATPRGKGXXLXGPLXVPXSLTPXPRXFXWGXXXSXPPKGG 816
P GP G GG S + TP+G+G + S+ P + G PP G
Sbjct: 124 PAGLAGPVRGVGGPSQQVM--TPQGRGTVAAAAVAATASIAGAPTQYPPGRGTPPPPVGR 181
Query: 817 XXFPP 831
PP
Sbjct: 182 ATPPP 186
>J04615-1|AAA36617.1| 240|Homo sapiens protein ( Human lupus
autoantigen (small nuclear ribonuclepoprotein, snRNP,
SM-D) mRNA, complete cds. ).
Length = 240
Score = 30.7 bits (66), Expect = 7.3
Identities = 19/65 (29%), Positives = 25/65 (38%)
Frame = +1
Query: 637 PFXXPGPGXGXGGFSXXIXXATPRGKGXXLXGPLXVPXSLTPXPRXFXWGXXXSXPPKGG 816
P GP G GG S + TP+G+G + S+ P + G PP G
Sbjct: 124 PAGLAGPVRGVGGPSQQVM--TPQGRGTVAAAAVAATASIAGAPTQYPPGRGTPPPPVGR 181
Query: 817 XXFPP 831
PP
Sbjct: 182 ATPPP 186
>CR450350-1|CAG29346.1| 240|Homo sapiens SNRPN protein.
Length = 240
Score = 30.7 bits (66), Expect = 7.3
Identities = 19/65 (29%), Positives = 25/65 (38%)
Frame = +1
Query: 637 PFXXPGPGXGXGGFSXXIXXATPRGKGXXLXGPLXVPXSLTPXPRXFXWGXXXSXPPKGG 816
P GP G GG S + TP+G+G + S+ P + G PP G
Sbjct: 124 PAGLAGPVRGVGGPSQQVM--TPQGRGTVAAAAVAATASIAGAPTQYPPGRGTPPPPVGR 181
Query: 817 XXFPP 831
PP
Sbjct: 182 ATPPP 186
>BC025178-1|AAH25178.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N protein.
Length = 240
Score = 30.7 bits (66), Expect = 7.3
Identities = 19/65 (29%), Positives = 25/65 (38%)
Frame = +1
Query: 637 PFXXPGPGXGXGGFSXXIXXATPRGKGXXLXGPLXVPXSLTPXPRXFXWGXXXSXPPKGG 816
P GP G GG S + TP+G+G + S+ P + G PP G
Sbjct: 124 PAGLAGPVRGVGGPSQQVM--TPQGRGTVAAAAVAATASIAGAPTQYPPGRGTPPPPVGR 181
Query: 817 XXFPP 831
PP
Sbjct: 182 ATPPP 186
>BC024777-1|AAH24777.1| 240|Homo sapiens SNURF protein protein.
Length = 240
Score = 30.7 bits (66), Expect = 7.3
Identities = 19/65 (29%), Positives = 25/65 (38%)
Frame = +1
Query: 637 PFXXPGPGXGXGGFSXXIXXATPRGKGXXLXGPLXVPXSLTPXPRXFXWGXXXSXPPKGG 816
P GP G GG S + TP+G+G + S+ P + G PP G
Sbjct: 124 PAGLAGPVRGVGGPSQQVM--TPQGRGTVAAAAVAATASIAGAPTQYPPGRGTPPPPVGR 181
Query: 817 XXFPP 831
PP
Sbjct: 182 ATPPP 186
>BC003180-1|AAH03180.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N protein.
Length = 240
Score = 30.7 bits (66), Expect = 7.3
Identities = 19/65 (29%), Positives = 25/65 (38%)
Frame = +1
Query: 637 PFXXPGPGXGXGGFSXXIXXATPRGKGXXLXGPLXVPXSLTPXPRXFXWGXXXSXPPKGG 816
P GP G GG S + TP+G+G + S+ P + G PP G
Sbjct: 124 PAGLAGPVRGVGGPSQQVM--TPQGRGTVAAAAVAATASIAGAPTQYPPGRGTPPPPVGR 181
Query: 817 XXFPP 831
PP
Sbjct: 182 ATPPP 186
>BC000611-1|AAH00611.1| 240|Homo sapiens SNRPN protein protein.
Length = 240
Score = 30.7 bits (66), Expect = 7.3
Identities = 19/65 (29%), Positives = 25/65 (38%)
Frame = +1
Query: 637 PFXXPGPGXGXGGFSXXIXXATPRGKGXXLXGPLXVPXSLTPXPRXFXWGXXXSXPPKGG 816
P GP G GG S + TP+G+G + S+ P + G PP G
Sbjct: 124 PAGLAGPVRGVGGPSQQVM--TPQGRGTVAAAAVAATASIAGAPTQYPPGRGTPPPPVGR 181
Query: 817 XXFPP 831
PP
Sbjct: 182 ATPPP 186
>AK222633-1|BAD96353.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N variant protein.
Length = 240
Score = 30.7 bits (66), Expect = 7.3
Identities = 19/65 (29%), Positives = 25/65 (38%)
Frame = +1
Query: 637 PFXXPGPGXGXGGFSXXIXXATPRGKGXXLXGPLXVPXSLTPXPRXFXWGXXXSXPPKGG 816
P GP G GG S + TP+G+G + S+ P + G PP G
Sbjct: 124 PAGLAGPVRGVGGPSQQVM--TPQGRGTVAAAAVAATASIAGAPTQYPPGRGTPPPPVGR 181
Query: 817 XXFPP 831
PP
Sbjct: 182 ATPPP 186
>AF400432-1|AAK92481.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N protein.
Length = 240
Score = 30.7 bits (66), Expect = 7.3
Identities = 19/65 (29%), Positives = 25/65 (38%)
Frame = +1
Query: 637 PFXXPGPGXGXGGFSXXIXXATPRGKGXXLXGPLXVPXSLTPXPRXFXWGXXXSXPPKGG 816
P GP G GG S + TP+G+G + S+ P + G PP G
Sbjct: 124 PAGLAGPVRGVGGPSQQVM--TPQGRGTVAAAAVAATASIAGAPTQYPPGRGTPPPPVGR 181
Query: 817 XXFPP 831
PP
Sbjct: 182 ATPPP 186
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,903,441
Number of Sequences: 237096
Number of extensions: 1708651
Number of successful extensions: 3280
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 2657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3211
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11270645666
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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