Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_I05
         (882 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88173-3|AAK21382.1|   73|Caenorhabditis elegans Ubiquitin-like ...   138   5e-33
AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical ...    30   1.9  
U80839-3|AAB37909.1|  344|Caenorhabditis elegans Serpentine rece...    28   7.7  

>U88173-3|AAK21382.1|   73|Caenorhabditis elegans Ubiquitin-like
           family protein 5 protein.
          Length = 73

 Score =  138 bits (334), Expect = 5e-33
 Identities = 58/73 (79%), Positives = 67/73 (91%)
 Frame = +2

Query: 158 MLEVTCNDRLGKKVRVKCNPDDTVGDLKKLIAAQTGTRYDKIVLKKWYTVFKDHIKLADY 337
           M+E+T NDRLGKKVR+KCNP DT+GDLKKLIAAQTGTR++KIVLKKWYT++KDHI L DY
Sbjct: 1   MIEITVNDRLGKKVRIKCNPSDTIGDLKKLIAAQTGTRWEKIVLKKWYTIYKDHITLMDY 60

Query: 338 EIHDGMNLELYYQ 376
           EIH+G N ELYYQ
Sbjct: 61  EIHEGFNFELYYQ 73


>AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical
           protein Y63D3A.5 protein.
          Length = 486

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 16/48 (33%), Positives = 18/48 (37%)
 Frame = -1

Query: 843 PPXXWGKPXXPLXGXXXPXPPPEXPGXXXQ*XXNRKGPXKXXPFSPGG 700
           PP  +G P  P        PPP  PG        + GP    P  PGG
Sbjct: 393 PPSAFGAPQGPGGPGGYGPPPPGGPGAPGSYGPPQGGPGGFGPPPPGG 440


>U80839-3|AAB37909.1|  344|Caenorhabditis elegans Serpentine
           receptor, class h protein72 protein.
          Length = 344

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 17/63 (26%), Positives = 36/63 (57%)
 Frame = -1

Query: 306 TVYHFLSTILSYLVPVCAAINFFKSPTVSSGLHLTRTFLPSRSLHVTSSILLSNQLSVLL 127
           T Y+F  ++ S+ V    A+NF   PTV   + +   +  + ++HV+ ++L   + S++L
Sbjct: 87  TSYNFYPSLASFSVGYATALNF---PTV---VQICILYTINDAVHVSITLLFEIRSSLIL 140

Query: 126 RNK 118
           +N+
Sbjct: 141 KNR 143


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,945,248
Number of Sequences: 27780
Number of extensions: 230182
Number of successful extensions: 554
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)