Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_I04
         (899 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0431 + 29308635-29308782,29308882-29309048,29309747-29309869     82   5e-16
02_05_1254 - 35275050-35275178,35275701-35275867,35275969-35276116     80   2e-15
05_06_0252 - 26695467-26695595,26697233-26697399,26697503-26697650     79   4e-15
05_06_0118 + 25735966-25737601,25737698-25738488                       30   2.9  
09_02_0336 - 7397745-7398308,7398813-7400723                           29   6.7  
03_05_0394 + 23758392-23758625,23759097-23759273,23759349-237594...    29   6.7  
01_01_1190 + 9463973-9465732,9466210-9466440,9467664-9467793,946...    28   8.8  

>01_06_0431 + 29308635-29308782,29308882-29309048,29309747-29309869
          Length = 145

 Score = 82.2 bits (194), Expect = 5e-16
 Identities = 49/124 (39%), Positives = 69/124 (55%), Gaps = 5/124 (4%)
 Frame = +1

Query: 121 SLNWMIIRNNNAFLVKK---RNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRK 291
           SL W +++ NN+FLVK+    N K  FSKEPNN+ N+HS++++GL +KK V  V+    K
Sbjct: 7   SLVWELVKKNNSFLVKQFGNGNAKVQFSKEPNNLYNVHSYKHSGLANKKTV-TVQPASGK 65

Query: 292 GFTVVYKKAKATR--KPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASA 465
              VV    K  +  KPA    +   +   R+    VK  +  N+YR DL K  L R SA
Sbjct: 66  ETAVVLSTTKTEKQNKPASLYHKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSA 125

Query: 466 ILRS 477
           + RS
Sbjct: 126 VYRS 129


>02_05_1254 - 35275050-35275178,35275701-35275867,35275969-35276116
          Length = 147

 Score = 80.2 bits (189), Expect = 2e-15
 Identities = 45/122 (36%), Positives = 67/122 (54%), Gaps = 4/122 (3%)
 Frame = +1

Query: 124 LNWMIIRNNNAFLVKK---RNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKG 294
           L W I++ NN FLVK+    N K  F+KEPNN+ N+HS++++GL +KK V +  +  +  
Sbjct: 8   LFWEIVKKNNCFLVKQFGNSNAKVQFTKEPNNLYNVHSYKHSGLANKKTVTIQPSGGKDA 67

Query: 295 FTVV-YKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAIL 471
             V+   K K    PAK   +   +   R+    VK  +  N+YR DL K  L R S++ 
Sbjct: 68  AVVLSTTKTKKQNAPAKLYHKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSSVY 127

Query: 472 RS 477
           RS
Sbjct: 128 RS 129


>05_06_0252 - 26695467-26695595,26697233-26697399,26697503-26697650
          Length = 147

 Score = 79.4 bits (187), Expect = 4e-15
 Identities = 45/122 (36%), Positives = 67/122 (54%), Gaps = 4/122 (3%)
 Frame = +1

Query: 124 LNWMIIRNNNAFLVKK---RNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKG 294
           L W I++ NN FLVK+    N K  F+KEPNN+ N+HS++++GL +KK V +  +  +  
Sbjct: 8   LIWEIVKKNNCFLVKQFGNSNAKVQFTKEPNNLYNVHSYKHSGLANKKTVTIQPSGVKDA 67

Query: 295 FTVV-YKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAIL 471
             V+   K K    PAK   +   +   R+    VK  +  N+YR DL K  L R S++ 
Sbjct: 68  AVVLSTTKTKKQNAPAKLYHKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSSVY 127

Query: 472 RS 477
           RS
Sbjct: 128 RS 129


>05_06_0118 + 25735966-25737601,25737698-25738488
          Length = 808

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +1

Query: 25  TICGIPLRXFGHLLSTLCFGCRNRFKPVKMSSSLNWMIIRNNNAFLVK 168
           T  G+P R     LS +     N+ +PV ++  L+W+I   N +FL+K
Sbjct: 222 TAGGVPFRFCSFALSAIRNAVANKLQPVFVNGFLHWLI---NPSFLLK 266


>09_02_0336 - 7397745-7398308,7398813-7400723
          Length = 824

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 10/34 (29%), Positives = 23/34 (67%)
 Frame = +3

Query: 108 KNVVVTELDDHPQQQCIPCEEAQYQKAVQQGAEQ 209
           KN ++  L+    +QCI C + ++ K++++GA++
Sbjct: 184 KNEILPPLEFSDLEQCIECIKGKFVKSIKKGAKR 217


>03_05_0394 +
           23758392-23758625,23759097-23759273,23759349-23759453,
           23759640-23759681,23759763-23759960,23760037-23760165,
           23760248-23760377,23761119-23761179,23761241-23761322,
           23761402-23761653
          Length = 469

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -3

Query: 222 EVSHIVRLLAERLFDIALLHKECIVVADDHPVQ*RRH 112
           +VSHI+ +  E+  D+AL + EC +  + H  Q   H
Sbjct: 361 KVSHIIVVACEKCLDLALKYVECCLKHNQHFEQNEPH 397


>01_01_1190 +
           9463973-9465732,9466210-9466440,9467664-9467793,
           9468723-9468888,9469528-9469859,9470284-9470513,
           9471535-9471613,9471689-9471865
          Length = 1034

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 437 ARLPFVVLQPSSAPRGPLKQKRLRQPQPSRNN 532
           A  PF  +  +S+PR P   +  RQP P R++
Sbjct: 10  ASAPFPTIPAASSPRNPRAARPRRQPAPFRSS 41


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,540,128
Number of Sequences: 37544
Number of extensions: 323840
Number of successful extensions: 716
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)