Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_I04
(899 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR457024-1|CAG33305.1| 137|Homo sapiens RPL28 protein. 126 8e-29
BC011582-1|AAH11582.1| 137|Homo sapiens ribosomal protein L28 p... 126 8e-29
BC010182-1|AAH10182.1| 137|Homo sapiens ribosomal protein L28 p... 126 8e-29
BC010173-1|AAH10173.1| 137|Homo sapiens ribosomal protein L28 p... 126 8e-29
U14969-1|AAA85657.1| 137|Homo sapiens ribosomal protein L28 pro... 125 2e-28
AB209627-1|BAD92864.1| 95|Homo sapiens ribosomal protein L28 v... 75 3e-13
AB007179-1|BAA25838.1| 53|Homo sapiens ribosomal protein L28 p... 48 4e-05
BC062339-1|AAH62339.1| 458|Homo sapiens alkB, alkylation repair... 31 4.3
AK000315-1|BAA91078.1| 378|Homo sapiens protein ( Homo sapiens ... 31 4.3
>CR457024-1|CAG33305.1| 137|Homo sapiens RPL28 protein.
Length = 137
Score = 126 bits (305), Expect = 8e-29
Identities = 60/126 (47%), Positives = 84/126 (66%)
Frame = +1
Query: 112 MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRK 291
MS+ L WM++RN ++FL+K+ K+ +S EPNN+ +SFRYNGLIH+K VGV D K
Sbjct: 1 MSAHLQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGK 58
Query: 292 GFTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAIL 471
G VV K+ RKPA + +R AR +L ++ +++ N YR DL A +RRASAIL
Sbjct: 59 GVVVVIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAIL 118
Query: 472 RSQRPI 489
RSQ+P+
Sbjct: 119 RSQKPV 124
>BC011582-1|AAH11582.1| 137|Homo sapiens ribosomal protein L28
protein.
Length = 137
Score = 126 bits (305), Expect = 8e-29
Identities = 60/126 (47%), Positives = 84/126 (66%)
Frame = +1
Query: 112 MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRK 291
MS+ L WM++RN ++FL+K+ K+ +S EPNN+ +SFRYNGLIH+K VGV D K
Sbjct: 1 MSAHLQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGK 58
Query: 292 GFTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAIL 471
G VV K+ RKPA + +R AR +L ++ +++ N YR DL A +RRASAIL
Sbjct: 59 GVVVVIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAIL 118
Query: 472 RSQRPI 489
RSQ+P+
Sbjct: 119 RSQKPV 124
>BC010182-1|AAH10182.1| 137|Homo sapiens ribosomal protein L28
protein.
Length = 137
Score = 126 bits (305), Expect = 8e-29
Identities = 60/126 (47%), Positives = 84/126 (66%)
Frame = +1
Query: 112 MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRK 291
MS+ L WM++RN ++FL+K+ K+ +S EPNN+ +SFRYNGLIH+K VGV D K
Sbjct: 1 MSAHLQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGK 58
Query: 292 GFTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAIL 471
G VV K+ RKPA + +R AR +L ++ +++ N YR DL A +RRASAIL
Sbjct: 59 GVVVVIKRRSGQRKPATSYVRTTINRNARATLSSIRHMIRKNKYRPDLRMAAIRRASAIL 118
Query: 472 RSQRPI 489
RSQ+P+
Sbjct: 119 RSQKPV 124
>BC010173-1|AAH10173.1| 137|Homo sapiens ribosomal protein L28
protein.
Length = 137
Score = 126 bits (305), Expect = 8e-29
Identities = 60/126 (47%), Positives = 84/126 (66%)
Frame = +1
Query: 112 MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRK 291
MS+ L WM++RN ++FL+K+ K+ +S EPNN+ +SFRYNGLIH+K VGV D K
Sbjct: 1 MSAHLQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGK 58
Query: 292 GFTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAIL 471
G VV K+ RKPA + +R AR +L ++ +++ N YR DL A +RRASAIL
Sbjct: 59 GVVVVIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAIL 118
Query: 472 RSQRPI 489
RSQ+P+
Sbjct: 119 RSQKPV 124
>U14969-1|AAA85657.1| 137|Homo sapiens ribosomal protein L28
protein.
Length = 137
Score = 125 bits (302), Expect = 2e-28
Identities = 59/126 (46%), Positives = 84/126 (66%)
Frame = +1
Query: 112 MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRK 291
MS+ L WM++RN ++FL+K+ K+ +S EPNN+ +SFRYNGLIH+K VGV D K
Sbjct: 1 MSAHLQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGK 58
Query: 292 GFTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAIL 471
G VV K+ RKPA + +R AR +L ++ +++ N YR DL A +RRASAIL
Sbjct: 59 GVVVVIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAIL 118
Query: 472 RSQRPI 489
R+Q+P+
Sbjct: 119 RTQKPV 124
>AB209627-1|BAD92864.1| 95|Homo sapiens ribosomal protein L28
variant protein.
Length = 95
Score = 75.4 bits (177), Expect = 3e-13
Identities = 35/68 (51%), Positives = 48/68 (70%)
Frame = +1
Query: 112 MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRK 291
MS+ L WM++RN ++FL+K+ K+ +S EPNN+ +SFRYNGLIH+K VGV D K
Sbjct: 9 MSAHLQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGK 66
Query: 292 GFTVVYKK 315
G VV K+
Sbjct: 67 GVVVVIKR 74
>AB007179-1|BAA25838.1| 53|Homo sapiens ribosomal protein L28
protein.
Length = 53
Score = 48.4 bits (110), Expect = 4e-05
Identities = 21/47 (44%), Positives = 31/47 (65%)
Frame = +1
Query: 349 IRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRSQRPI 489
+R AR +L ++ +++ N YR DL A +RRASAILRSQ+P+
Sbjct: 4 VRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQKPV 50
>BC062339-1|AAH62339.1| 458|Homo sapiens alkB, alkylation repair
homolog 5 (E. coli) protein.
Length = 458
Score = 31.5 bits (68), Expect = 4.3
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +1
Query: 67 STLCFGCRNRFKPVKMSSSLNWMIIRNNN 153
S LCFGC+ +FKP+++S + + +R +
Sbjct: 224 SALCFGCKFQFKPIRVSEPVLSLPVRRGS 252
>AK000315-1|BAA91078.1| 378|Homo sapiens protein ( Homo sapiens
cDNA FLJ20308 fis, clone HEP07264. ).
Length = 378
Score = 31.5 bits (68), Expect = 4.3
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +1
Query: 67 STLCFGCRNRFKPVKMSSSLNWMIIRNNN 153
S LCFGC+ +FKP+++S + + +R +
Sbjct: 208 SALCFGCKFQFKPIRVSEPVLSLPVRRGS 236
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,744,718
Number of Sequences: 237096
Number of extensions: 1801510
Number of successful extensions: 10346
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10340
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11603768198
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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