Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_I04
         (899 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75547-8|CAA99898.1|  126|Caenorhabditis elegans Hypothetical pr...    64   1e-10
AF039052-5|AAF98626.2|  586|Caenorhabditis elegans Hypothetical ...    29   4.5  
Z93386-5|CAB07646.1|  473|Caenorhabditis elegans Hypothetical pr...    29   6.0  

>Z75547-8|CAA99898.1|  126|Caenorhabditis elegans Hypothetical
           protein R11D1.8 protein.
          Length = 126

 Score = 64.5 bits (150), Expect = 1e-10
 Identities = 47/123 (38%), Positives = 67/123 (54%)
 Frame = +1

Query: 112 MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRK 291
           MS +L W +IRNN+AFL  +R I K FS E  N+  ++S +Y+GL +K A+ V  +   K
Sbjct: 1   MSDALVWQVIRNNSAFLRTQRGIGKRFSTEKFNLKKVNSPKYSGLANKHAIDV--SAAAK 58

Query: 292 GFTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAIL 471
           G  V  K  K   +PAK +        ++  +  V+RL K N       K   RRA+AI+
Sbjct: 59  GVVVSTKNEKG--RPAKAVTTSTL---SKTPVASVRRLAK-NAGFNKFNKLAQRRAAAIV 112

Query: 472 RSQ 480
           RSQ
Sbjct: 113 RSQ 115


>AF039052-5|AAF98626.2|  586|Caenorhabditis elegans Hypothetical
           protein T22D1.4 protein.
          Length = 586

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = -3

Query: 297 ESLPVRVLHDTNSFLVNQAVVPEGVEVSHIVRLLAERLFDIALLHK 160
           E+ PV+V ++ NS  V   +V   +EVSH   +  E    I L+HK
Sbjct: 192 ETKPVKVHYENNSPFVIATIVERFIEVSHWGNIAVEEY--IELVHK 235


>Z93386-5|CAB07646.1|  473|Caenorhabditis elegans Hypothetical
           protein R11H6.1 protein.
          Length = 473

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +1

Query: 82  GCRNRFKPVKMSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNV 213
           G  N FKP    S+  W++  N++ FL   R +K+    EP+ +
Sbjct: 369 GSPNVFKPRPGHSAKPWVVDVNDSNFLAGARAMKRVHGVEPDRI 412


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,089,280
Number of Sequences: 27780
Number of extensions: 262219
Number of successful extensions: 672
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)