Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_I04
(899 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr... 27 0.31
AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex det... 25 0.94
L10433-1|AAA27732.1| 149|Apis mellifera transposase protein. 25 1.2
DQ325076-1|ABD14090.1| 191|Apis mellifera complementary sex det... 25 1.2
AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 24 2.2
M29490-1|AAA27725.1| 109|Apis mellifera protein ( Bee homeobox-... 22 6.6
DQ325083-1|ABD14097.1| 189|Apis mellifera complementary sex det... 22 6.6
AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex det... 22 8.8
AY569694-1|AAS86647.1| 400|Apis mellifera complementary sex det... 22 8.8
AY155490-1|AAO12861.1| 342|Apis mellifera Ammar1 transposase pr... 22 8.8
>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
protein.
Length = 1308
Score = 26.6 bits (56), Expect = 0.31
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +2
Query: 416 TTTAQTYARLPFVVLQPSSAPRGPLKQKRLRQPQPSRNN 532
TT A YAR+ + ++ + P Q++ Q QPSRNN
Sbjct: 1267 TTGAAVYARV--IAPTTITSSQSPGNQQQTIQTQPSRNN 1303
>AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex
determiner protein.
Length = 426
Score = 25.0 bits (52), Expect = 0.94
Identities = 17/61 (27%), Positives = 28/61 (45%)
Frame = +1
Query: 88 RNRFKPVKMSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVG 267
R R + K+ SSL+ I NNN + N ++ NN N + Y +I+ + +
Sbjct: 306 RERSREPKIISSLSNKTIHNNNNY--NNNNYNNNYNNYNNNNYNNYKKLYYNIINIEQIP 363
Query: 268 V 270
V
Sbjct: 364 V 364
>L10433-1|AAA27732.1| 149|Apis mellifera transposase protein.
Length = 149
Score = 24.6 bits (51), Expect = 1.2
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 142 RNNNAFLVKKRNIKKPFSKEP 204
R N+ L+KKRN PF K P
Sbjct: 8 RINSCDLLKKRNENDPFLKRP 28
>DQ325076-1|ABD14090.1| 191|Apis mellifera complementary sex
determiner protein.
Length = 191
Score = 24.6 bits (51), Expect = 1.2
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = +1
Query: 88 RNRFKPVKMSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYN 240
R R + K+ SSL+ I NNN + N ++ NN N YN
Sbjct: 73 RERSREPKIISSLSNKTIHNNNNY---NNNNYNNYNYNNNNYNNYKKLYYN 120
>AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex
determiner protein.
Length = 428
Score = 23.8 bits (49), Expect = 2.2
Identities = 17/61 (27%), Positives = 26/61 (42%)
Frame = +1
Query: 88 RNRFKPVKMSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVG 267
R R + K+ SSL+ I NNN + N + NN N Y +I+ + +
Sbjct: 306 RERSREPKIISSLSNKTIHNNNNYKYNYNNNNYNNNNYNNNYNNNCKKLYYNIINIEQIP 365
Query: 268 V 270
V
Sbjct: 366 V 366
>M29490-1|AAA27725.1| 109|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone E30. ).
Length = 109
Score = 22.2 bits (45), Expect = 6.6
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = +1
Query: 352 RRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRSQ 480
+RP A + L ++KR N Y T+ + L R + +Q
Sbjct: 21 KRPRTAFSAEQLARLKREFAENRYLTERRRQQLSRDLGLTEAQ 63
>DQ325083-1|ABD14097.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 22.2 bits (45), Expect = 6.6
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +1
Query: 88 RNRFKPVKMSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNN 210
R R + K+ SSL+ I NNN + K N ++ NN
Sbjct: 73 RERSREPKIISSLSNKTIHNNNNY---KYNYNNKYNYNNNN 110
>AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 21.8 bits (44), Expect = 8.8
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 88 RNRFKPVKMSSSLNWMIIRNNNAF 159
R R K K+ SSL+ I NNN +
Sbjct: 306 RERSKESKIISSLSNKTIHNNNNY 329
>AY569694-1|AAS86647.1| 400|Apis mellifera complementary sex
determiner protein.
Length = 400
Score = 21.8 bits (44), Expect = 8.8
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 88 RNRFKPVKMSSSLNWMIIRNNNAF 159
R R K K+ SSL+ I NNN +
Sbjct: 295 RERSKEPKIISSLSNKTIHNNNNY 318
>AY155490-1|AAO12861.1| 342|Apis mellifera Ammar1 transposase
protein.
Length = 342
Score = 21.8 bits (44), Expect = 8.8
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +1
Query: 142 RNNNAFLVKKRNIKKPFSK 198
R N+ L+KKRN PF K
Sbjct: 129 RINSCDLLKKRNENDPFLK 147
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,557
Number of Sequences: 438
Number of extensions: 3021
Number of successful extensions: 31
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29146299
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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