Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_I03
(891 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic acetyl... 25 1.1
EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic acetyl... 25 1.1
EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic acetyl... 25 1.1
EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic acetyl... 25 1.1
EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic acetyl... 25 1.1
AM292376-1|CAL23188.2| 402|Tribolium castaneum gustatory recept... 24 1.8
AM292332-1|CAL23144.2| 344|Tribolium castaneum gustatory recept... 24 1.8
AM292361-1|CAL23173.2| 373|Tribolium castaneum gustatory recept... 22 7.4
AY293621-1|AAP46162.1| 392|Tribolium castaneum glass protein pr... 21 9.8
AM292381-1|CAL23193.2| 364|Tribolium castaneum gustatory recept... 21 9.8
>EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
5 protein.
Length = 311
Score = 24.6 bits (51), Expect = 1.1
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +1
Query: 304 KMRGSMLSPXKF--KPFSNEGKPLVVQFTVKHEQDID 408
++ ++L P +P +NE +PL V+F + +Q ID
Sbjct: 6 RLLNNLLGPYNVLERPVANESEPLEVKFGLTLQQIID 42
>EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
4 protein.
Length = 311
Score = 24.6 bits (51), Expect = 1.1
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +1
Query: 304 KMRGSMLSPXKF--KPFSNEGKPLVVQFTVKHEQDID 408
++ ++L P +P +NE +PL V+F + +Q ID
Sbjct: 6 RLLNNLLGPYNVLERPVANESEPLEVKFGLTLQQIID 42
>EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
3 protein.
Length = 311
Score = 24.6 bits (51), Expect = 1.1
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +1
Query: 304 KMRGSMLSPXKF--KPFSNEGKPLVVQFTVKHEQDID 408
++ ++L P +P +NE +PL V+F + +Q ID
Sbjct: 6 RLLNNLLGPYNVLERPVANESEPLEVKFGLTLQQIID 42
>EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
2 protein.
Length = 311
Score = 24.6 bits (51), Expect = 1.1
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +1
Query: 304 KMRGSMLSPXKF--KPFSNEGKPLVVQFTVKHEQDID 408
++ ++L P +P +NE +PL V+F + +Q ID
Sbjct: 6 RLLNNLLGPYNVLERPVANESEPLEVKFGLTLQQIID 42
>EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
1 protein.
Length = 311
Score = 24.6 bits (51), Expect = 1.1
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +1
Query: 304 KMRGSMLSPXKF--KPFSNEGKPLVVQFTVKHEQDID 408
++ ++L P +P +NE +PL V+F + +Q ID
Sbjct: 6 RLLNNLLGPYNVLERPVANESEPLEVKFGLTLQQIID 42
>AM292376-1|CAL23188.2| 402|Tribolium castaneum gustatory receptor
candidate 55 protein.
Length = 402
Score = 23.8 bits (49), Expect = 1.8
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +3
Query: 231 FGKFKLTAGKFFSD-PEDDKGSKTSEDARFYALSR 332
FGK T FFSD +DDK + S++ Y L R
Sbjct: 203 FGKINRTMRSFFSDNKQDDKIPQISDN--LYILCR 235
>AM292332-1|CAL23144.2| 344|Tribolium castaneum gustatory receptor
candidate 11 protein.
Length = 344
Score = 23.8 bits (49), Expect = 1.8
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +3
Query: 231 FGKFKLTAGKFFSD-PEDDKGSKTSEDARFYALSR 332
FGK T FFSD +DDK + S++ Y L R
Sbjct: 203 FGKINRTMRSFFSDNKQDDKIPQISDN--LYILCR 235
>AM292361-1|CAL23173.2| 373|Tribolium castaneum gustatory receptor
candidate 40 protein.
Length = 373
Score = 21.8 bits (44), Expect = 7.4
Identities = 6/14 (42%), Positives = 9/14 (64%)
Frame = -1
Query: 195 FPTNHQETSPQRIH 154
FP NH P+++H
Sbjct: 41 FPLNHLNEEPEKLH 54
>AY293621-1|AAP46162.1| 392|Tribolium castaneum glass protein
protein.
Length = 392
Score = 21.4 bits (43), Expect = 9.8
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = +1
Query: 100 SCCTWSLSACW 132
S CT LS+CW
Sbjct: 31 SACTDDLSSCW 41
>AM292381-1|CAL23193.2| 364|Tribolium castaneum gustatory receptor
candidate 60 protein.
Length = 364
Score = 21.4 bits (43), Expect = 9.8
Identities = 10/33 (30%), Positives = 15/33 (45%)
Frame = -1
Query: 282 HPLGR*RTFQQSI*TFQILFLGAHCTPNCFPTN 184
+P+G S+ F ++FL CT C N
Sbjct: 133 YPVGIVGVKNASLFIFDLIFLSFRCTKLCKEAN 165
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,762
Number of Sequences: 336
Number of extensions: 4137
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24720487
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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