Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_I03
(891 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe... 90 3e-19
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce... 40 5e-04
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 29 1.2
SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr 1... 29 1.2
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 28 1.6
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|... 27 4.7
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc... 27 4.7
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 26 6.3
SPAC23G3.05c |||regulator of G-protein signaling |Schizosaccharo... 26 6.3
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo... 26 8.3
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa... 26 8.3
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 26 8.3
SPAC1687.21 ||SPAC222.01|phosphoglycerate mutase family |Schizos... 26 8.3
>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 560
Score = 90.2 bits (214), Expect = 3e-19
Identities = 52/131 (39%), Positives = 71/131 (54%), Gaps = 7/131 (5%)
Frame = +1
Query: 340 KPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPDICGPGT 519
+P + K LVVQ+ V E+ ++CGG YLK+ + +M Y IMFGPD CG
Sbjct: 109 EPINEPEKDLVVQYEVNPEEGLNCGGAYLKLL-AEPTHGEMSNSIDYRIMFGPDKCGVND 167
Query: 520 KKVHVIFSYKG-------KNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESG 678
+ VH IF +K + HL + T+LYTLIVKPD T+EV I+ + V G
Sbjct: 168 R-VHFIFKHKNPLTGEYSEKHLDSRPASLLKPGITNLYTLIVKPDQTFEVRINGDVVRQG 226
Query: 679 DLXADWDFLPP 711
L +DF+PP
Sbjct: 227 SLF--YDFIPP 235
>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 39.9 bits (89), Expect = 5e-04
Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 2/119 (1%)
Frame = +1
Query: 364 PLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPDICGPGTKKVHVIFS 543
P+V+ F VK + CG Y+ + + K++ E P I FG CG I S
Sbjct: 103 PIVLSFQVKPTKPWTCGHAYVSLVH-QSNPKNVSKEPPSVIRFGVKKCGMFDYISLSIIS 161
Query: 544 YKGK--NHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLXADWDFLPPK 714
Y GK HL + T +YTL+++ + T + D V +GD+ ++ P K
Sbjct: 162 YDGKVSCHLYDAPPSGLVEGRTSMYTLLLQ-NTTVVIRRDQSVVYTGDVGTNFFHSPTK 219
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 28.7 bits (61), Expect = 1.2
Identities = 24/88 (27%), Positives = 43/88 (48%)
Frame = -3
Query: 310 ASSEVFEPLSSSGSLKNFPAVNLNFPNSFPGCSLYTQLLSHESSGNFSSKNTSQFIEDNA 131
+SS SSS S + + + + +S P S + S SS + SS ++S+ ++
Sbjct: 180 SSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSR-PSSSS 238
Query: 130 SKLTTTKYNSFHFRFTVPPSSNKRQATN 47
S +TT ++F TV PSS+ ++
Sbjct: 239 SFITTMSSSTFISTVTVTPSSSSSSTSS 266
>SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 484
Score = 28.7 bits (61), Expect = 1.2
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1
Query: 274 QRMTKVRKPLKMRGSMLSPXKFKPFSN 354
Q +TK+R PL M S+LS + PF N
Sbjct: 331 QDVTKIRDPLAMDTSVLSAIEVDPFEN 357
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 28.3 bits (60), Expect = 1.6
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = -3
Query: 247 NLNFPNSFPGCSLYTQLLSHESSGNFSSKNTSQFIEDNASKLTT 116
N N F + + S +SGNFS T Q DN S +T
Sbjct: 575 NSNSQRPFSTVPSESNVFSRNASGNFSMSQTHQPTTDNTSSFST 618
>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 736
Score = 26.6 bits (56), Expect = 4.7
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Frame = +1
Query: 412 GGGYLKVFDCKLEQKDMHGETPYEIMFGPDICGPGTK----KVHVIFSYKGKNHLIKKDI 579
G +LKV + E M ETP +I++ + G+ +H K + KK++
Sbjct: 614 GKKFLKVDEATREDMLMSAETPDDILWITTLISTGSSMSHFPLHAYLEAKERQEFTKKNL 673
Query: 580 R--CKDDVYTH 606
CK+D + +
Sbjct: 674 LLFCKEDEFLY 684
>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
Thi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 26.6 bits (56), Expect = 4.7
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -3
Query: 316 NLASSEVFEPLSSSGSLKNFPAVNLNFPNSFP 221
N +E F+P + SL N P +N ++ ++ P
Sbjct: 685 NSTPNEAFQPFDQTSSLYNVPGLNKSYVSNQP 716
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 26.2 bits (55), Expect = 6.3
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = -1
Query: 210 CTPNCFPTNHQETSPQRIHHNLSKIMPAS*QRPSTT 103
C P FP N+QE H+ I AS Q + T
Sbjct: 791 CKPESFPANYQEVLDYYTHNGFRVIACASKQLENCT 826
>SPAC23G3.05c |||regulator of G-protein signaling
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 343
Score = 26.2 bits (55), Expect = 6.3
Identities = 17/69 (24%), Positives = 33/69 (47%)
Frame = +1
Query: 424 LKVFDCKLEQKDMHGETPYEIMFGPDICGPGTKKVHVIFSYKGKNHLIKKDIRCKDDVYT 603
+K+F + +K + +P+E+M P + P K H + ++R +DV T
Sbjct: 154 VKMFTQIIIEKYFNPASPHEVMLPPQLVQP---------ILDCKEHQRQDELRLFEDVET 204
Query: 604 HLYTLIVKP 630
+L ++KP
Sbjct: 205 YLLNFLLKP 213
>SPBC1773.09c |mug184||meiotically upregulated gene
Mug184|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 25.8 bits (54), Expect = 8.3
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +1
Query: 541 SYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVES 675
S + K H KK +D Y+H+Y + P + + + ++ ES
Sbjct: 137 STRKKEHFNKKPSFPRDTEYSHIYNMKYDPRSGIGIRVKRQEPES 181
>SPBC215.15 |sec13||COPII-coated vesicle component
Sec13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 25.8 bits (54), Expect = 8.3
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +3
Query: 165 EEKFPDDSWESNWVYS 212
EEKFPD +W +W S
Sbjct: 251 EEKFPDIAWRVSWSLS 266
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 25.8 bits (54), Expect = 8.3
Identities = 9/39 (23%), Positives = 20/39 (51%)
Frame = +3
Query: 168 EKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDD 284
+ F +D + +W EH K ++ + + FS+ +D+
Sbjct: 49 QAFQEDEGDEDWEEEEHKPKAKRRYNTRSNESFSEGDDE 87
>SPAC1687.21 ||SPAC222.01|phosphoglycerate mutase family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 209
Score = 25.8 bits (54), Expect = 8.3
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -1
Query: 396 FMFD-SELDYQGFTLITERFELXGREHRTSHLQRFSNLCH 280
F FD S+L+ + T T E+ EH T H+ F + H
Sbjct: 159 FTFDKSKLESKIITFNTSITEIEVTEHGTGHIHTFGDASH 198
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,030,205
Number of Sequences: 5004
Number of extensions: 65904
Number of successful extensions: 210
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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