Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_I03
(891 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X59589-1|CAA42159.1| 395|Caenorhabditis elegans calreticulin pr... 186 2e-47
AF125963-7|AAD14746.1| 395|Caenorhabditis elegans Calreticulin ... 186 2e-47
Z22181-5|CAA80183.1| 619|Caenorhabditis elegans Hypothetical pr... 86 3e-17
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 31 1.5
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 31 1.5
AF026215-6|AAB71325.1| 516|Caenorhabditis elegans Hypothetical ... 31 1.5
U64844-9|AAB18309.1| 330|Caenorhabditis elegans Serpentine rece... 28 7.8
>X59589-1|CAA42159.1| 395|Caenorhabditis elegans calreticulin
protein.
Length = 395
Score = 186 bits (452), Expect = 2e-47
Identities = 82/126 (65%), Positives = 96/126 (76%)
Frame = +1
Query: 340 KPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPDICGPGT 519
K FSN+GK LV+Q+TVKHEQ IDCGGGY+KV + D HGETPY +MFGPDICGP T
Sbjct: 78 KDFSNKGKTLVIQYTVKHEQGIDCGGGYVKVMRADADLGDFHGETPYNVMFGPDICGP-T 136
Query: 520 KKVHVIFSYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLXADWD 699
++VHVI +YKG+N LIKK+I CK D THLYTLI+ DNTYEV ID E ++G L DWD
Sbjct: 137 RRVHVILNYKGENKLIKKEITCKSDELTHLYTLILNSDNTYEVKIDGESAQTGSLEEDWD 196
Query: 700 FLPPKK 717
LP KK
Sbjct: 197 LLPAKK 202
Score = 71.3 bits (167), Expect = 8e-13
Identities = 30/60 (50%), Positives = 44/60 (73%)
Frame = +3
Query: 144 INCDVFFEEKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGSKTSEDARFYA 323
++ +V+F+E+F D SWE WV S+H +FG FKL+AGKFF D+G +TS+DA+FY+
Sbjct: 13 VSAEVYFKEEFNDASWEKRWVQSKHKD-DFGAFKLSAGKFFDVESRDQGIQTSQDAKFYS 71
>AF125963-7|AAD14746.1| 395|Caenorhabditis elegans Calreticulin
protein 1 protein.
Length = 395
Score = 186 bits (452), Expect = 2e-47
Identities = 82/126 (65%), Positives = 96/126 (76%)
Frame = +1
Query: 340 KPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPDICGPGT 519
K FSN+GK LV+Q+TVKHEQ IDCGGGY+KV + D HGETPY +MFGPDICGP T
Sbjct: 78 KDFSNKGKTLVIQYTVKHEQGIDCGGGYVKVMRADADLGDFHGETPYNVMFGPDICGP-T 136
Query: 520 KKVHVIFSYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLXADWD 699
++VHVI +YKG+N LIKK+I CK D THLYTLI+ DNTYEV ID E ++G L DWD
Sbjct: 137 RRVHVILNYKGENKLIKKEITCKSDELTHLYTLILNSDNTYEVKIDGESAQTGSLEEDWD 196
Query: 700 FLPPKK 717
LP KK
Sbjct: 197 LLPAKK 202
Score = 71.3 bits (167), Expect = 8e-13
Identities = 30/60 (50%), Positives = 44/60 (73%)
Frame = +3
Query: 144 INCDVFFEEKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGSKTSEDARFYA 323
++ +V+F+E+F D SWE WV S+H +FG FKL+AGKFF D+G +TS+DA+FY+
Sbjct: 13 VSAEVYFKEEFNDASWEKRWVQSKHKD-DFGAFKLSAGKFFDVESRDQGIQTSQDAKFYS 71
>Z22181-5|CAA80183.1| 619|Caenorhabditis elegans Hypothetical
protein ZK632.6 protein.
Length = 619
Score = 86.2 bits (204), Expect = 3e-17
Identities = 51/139 (36%), Positives = 73/139 (52%), Gaps = 13/139 (9%)
Frame = +1
Query: 343 PFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFD--CKLEQKDMHGETPYEIMFGPDICGPG 516
PF+ + VVQ+ +K E+ +CGGGYLK+ + + + +T Y IMFGPD CG
Sbjct: 130 PFAFDANTFVVQYDIKFEEGQECGGGYLKLLSEGAEKDLANFQDKTAYTIMFGPDKCG-A 188
Query: 517 TKKVHVIFSYKGKNHLIKKDIRCK----------DDVYTHLYTLIVKPDNTYEVLIDNEK 666
T KVH+IF YK + + DD THL+TL+VKP Y V +D +
Sbjct: 189 TGKVHLIFRYKNPINGTISEYHANQPTTIGSTYWDDHNTHLFTLVVKPTGEYSVSVDGKS 248
Query: 667 VESGDLXAD-WDFLPPKKQ 720
+ G++ +D L P KQ
Sbjct: 249 LYYGNMMSDVTPALTPPKQ 267
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical protein
K07E12.1a protein.
Length = 13100
Score = 30.7 bits (66), Expect = 1.5
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +1
Query: 553 KNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEV-LIDNEKVESGDLXA 690
K I+K++ C+D THL L D+TY V ++ NE+V++ A
Sbjct: 12856 KEKWIRKEVTCRDSFGTHLNEL--PSDHTYTVCVMTNERVDNSTALA 12900
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin protein.
Length = 13100
Score = 30.7 bits (66), Expect = 1.5
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +1
Query: 553 KNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEV-LIDNEKVESGDLXA 690
K I+K++ C+D THL L D+TY V ++ NE+V++ A
Sbjct: 12856 KEKWIRKEVTCRDSFGTHLNEL--PSDHTYTVCVMTNERVDNSTALA 12900
>AF026215-6|AAB71325.1| 516|Caenorhabditis elegans Hypothetical
protein F09G2.8 protein.
Length = 516
Score = 30.7 bits (66), Expect = 1.5
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = -3
Query: 205 TQLLSHESSGNFSSKNTSQFIEDNASKLTTTKYNSFHFRFTVPPSSN 65
T L HE N KNT D + +T + + F R VP S N
Sbjct: 6 TYLTPHEKEENGERKNTRMETHDGRADMTNFEMDLFDTRIEVPTSKN 52
>U64844-9|AAB18309.1| 330|Caenorhabditis elegans Serpentine
receptor, class h protein212 protein.
Length = 330
Score = 28.3 bits (60), Expect = 7.8
Identities = 15/71 (21%), Positives = 35/71 (49%)
Frame = -1
Query: 744 EAYHXFARLFLRRKEVPVCL*VARFNFLIVNEDFIGVVRFHNQSVQMCVDIIFAADIFFD 565
E + F + F+ + +P+ + + ++ V ++ FHNQ++ + II ++ FF
Sbjct: 235 ELHRKFQKAFITQLTIPIIILIIPIIYVGVTS----LLYFHNQAINNFIVIIVSSHGFFS 290
Query: 564 EMVLTLVTEDY 532
+V+ + Y
Sbjct: 291 TIVMICIHVPY 301
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,058,102
Number of Sequences: 27780
Number of extensions: 386296
Number of successful extensions: 1119
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1113
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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