Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_I02
         (909 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    25   1.1  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    23   3.3  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   4.4  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   4.4  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    22   7.6  

>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 15/60 (25%), Positives = 20/60 (33%)
 Frame = +3

Query: 420 APPPPTFTQETMPXXXXXXXXXXXXPGTMYDDFPPGASMPGAPHPPDMGAWNQMSLPPPP 599
           +PPP  +     P            PG  Y  +      P     P +  W+  S PPPP
Sbjct: 279 SPPPHVYN----PPDHIQQATPYSAPGPTYSTWST-VQTPTTVMSPTINCWSLTSSPPPP 333


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +3

Query: 498 GTMYDDFPPGASMPGAPHPPDMGAWNQMSLPPP 596
           G +Y++ PP A    A      G  +  + PPP
Sbjct: 4   GGIYEESPPPAPQSAATPISSSGMTSPAAAPPP 36


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 21/97 (21%), Positives = 31/97 (31%), Gaps = 3/97 (3%)
 Frame = +3

Query: 369 PEPNELWDNQFQDGGYPAPPPPTFTQETMPXXXXXXXXXXXXPGTMYDDFPPGASMPG-- 542
           PE +++  +      YP  P   F     P            P   Y   P G   P   
Sbjct: 179 PEMSQVAASWHTPSMYPLSPGAGFRS---PYPSALPISTSSLPSDFYRFSPTGLIPPHPG 235

Query: 543 -APHPPDMGAWNQMSLPPPPGSAPVIKELSIEEQSKK 650
            +PHPP + +   +  P P    P +    +    KK
Sbjct: 236 LSPHPPHLSSHPAIVTPGPKQELPDLNHKPLNLTIKK 272


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 21/97 (21%), Positives = 31/97 (31%), Gaps = 3/97 (3%)
 Frame = +3

Query: 369 PEPNELWDNQFQDGGYPAPPPPTFTQETMPXXXXXXXXXXXXPGTMYDDFPPGASMPG-- 542
           PE +++  +      YP  P   F     P            P   Y   P G   P   
Sbjct: 71  PEMSQVAASWHTPSMYPLSPGAGFRS---PYPSALPISTSSLPSDFYRFSPTGLIPPHPG 127

Query: 543 -APHPPDMGAWNQMSLPPPPGSAPVIKELSIEEQSKK 650
            +PHPP + +   +  P P    P +    +    KK
Sbjct: 128 LSPHPPHLSSHPAIVTPGPKQELPDLNHKPLNLTIKK 164


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -2

Query: 308 RPAAAFVPAQTPRSSASSPKLLSIPITITAI 216
           RP+  F+     ++ A SP  + IP+T+T++
Sbjct: 486 RPSIYFIS----KTLAESPIFIIIPVTLTSV 512


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,394
Number of Sequences: 336
Number of extensions: 4087
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25341085
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)