Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_I02
(909 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 0.91
SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease Pac1|S... 28 1.6
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 2.8
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb... 27 2.8
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 27 2.8
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 4.9
SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||... 27 4.9
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 4.9
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||... 27 4.9
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 26 6.4
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 26 6.4
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc... 26 8.5
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.1 bits (62), Expect = 0.91
Identities = 26/98 (26%), Positives = 34/98 (34%), Gaps = 6/98 (6%)
Frame = +3
Query: 417 PAPPPPTFTQETMPXXXXXXXXXXXXPGTMYDDFPPGAS----MPGAPHPPDMGAWNQMS 584
P PPP P G PPG + P P PP + A
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRY 792
Query: 585 LPPPPGS--APVIKELSIEEQSKKDAAIETEMRHQKAA 692
P P + P I E S+ E+ K +E + +KAA
Sbjct: 793 YAPAPQAEPEPKIDETSLTEEQK--IQLEEARKQRKAA 828
>SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease
Pac1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 28.3 bits (60), Expect = 1.6
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Frame = +3
Query: 315 KNDKDMLDENILSEISKLP------EPNELWDNQFQDGGYPAPPPP 434
K+ D +E ++ E S P E NE +F++G YP P PP
Sbjct: 91 KSRHDRQNEPVIEEPSSHPKNQKNQENNEPTSEEFEEGEYPPPLPP 136
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.5 bits (58), Expect = 2.8
Identities = 16/58 (27%), Positives = 24/58 (41%)
Frame = +3
Query: 519 PPGASMPGAPHPPDMGAWNQMSLPPPPGSAPVIKELSIEEQSKKDAAIETEMRHQKAA 692
PPG + P P PP +Q PPPPG K + + + + R +A+
Sbjct: 5 PPG-NPPPPPPPPGFEPPSQPPPPPPPGYVKKRKNKTPAQSGNLEKQLNERARKWRAS 61
>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1328
Score = 27.5 bits (58), Expect = 2.8
Identities = 10/28 (35%), Positives = 13/28 (46%)
Frame = +3
Query: 522 PGASMPGAPHPPDMGAWNQMSLPPPPGS 605
P ++ P P PP WN+ P P S
Sbjct: 1236 PTSTFPSPPSPPSSSVWNKREHHPKPFS 1263
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 27.5 bits (58), Expect = 2.8
Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 3/25 (12%)
Frame = +1
Query: 172 NCRCL---MNTEVFIERSIAVIVIG 237
N RCL +N EVF R IA+I+IG
Sbjct: 564 NIRCLFIALNDEVFSIREIAIIIIG 588
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 26.6 bits (56), Expect = 4.9
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Frame = +3
Query: 519 PPGASMPGAPHPPDMGAWNQMSLPPPP---GSAPVI 617
PP S+P P P M A S PPPP SAP +
Sbjct: 1709 PPPMSVPPPPSAPPMPA-GPPSAPPPPLPASSAPSV 1743
>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 26.6 bits (56), Expect = 4.9
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 536 ARCPSST*HGSVESNVSSTTSRICPSHK 619
+R PS T G+ S SS+ + P+HK
Sbjct: 633 SRAPSGTTSGTASSTTSSSVASATPTHK 660
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.6 bits (56), Expect = 4.9
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 528 ASMPGAPHPPDMGAWNQMSLPPPPGSAP 611
+S+P P PP A + LPP SAP
Sbjct: 334 SSLPPPPPPPRSNAAGSIPLPPQGRSAP 361
>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 673
Score = 26.6 bits (56), Expect = 4.9
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 536 ARCPSST*HGSVESNVSSTTSRICPSHK 619
+R PS T G+ S SS+ + P+HK
Sbjct: 633 SRAPSGTTSGTASSTTSSSVASATPTHK 660
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 26.2 bits (55), Expect = 6.4
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 543 APHPPDMGAWNQMSLPPPPGSAPVI 617
A H P M A M++P PG AP++
Sbjct: 265 AQHFPGMPAMPMMNVPMGPGGAPLV 289
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 26.2 bits (55), Expect = 6.4
Identities = 22/65 (33%), Positives = 23/65 (35%), Gaps = 6/65 (9%)
Frame = +3
Query: 432 PTFTQETMPXXXXXXXXXXXXPGTMYDDFPPGASMPGAPHPPDMGAWN----QMSLPP-- 593
PT P PGT P + PG P PP GA MS PP
Sbjct: 466 PTQQSAVQPSNLVPSQNAPFIPGTSAPLPPTTFAPPGVPLPPIPGAPGMPNLNMSQPPMV 525
Query: 594 PPGSA 608
PPG A
Sbjct: 526 PPGMA 530
>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 25.8 bits (54), Expect = 8.5
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +3
Query: 54 CXXLXTFAXERFVGYYELPVHNCXTKEKLFISIQNQILS-ELQMSHEHRSFYREI 215
C L FA + + Y ++P+HN + + SIQ QI E + + + SF ++
Sbjct: 167 CISLDQFAEQICIDY-DIPLHNVHIVQNISKSIQAQINDYEPRKAQSNLSFVSDV 220
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,981,882
Number of Sequences: 5004
Number of extensions: 61422
Number of successful extensions: 218
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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