Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_I02
         (909 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.54 
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    25   0.72 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.7  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.8 bits (54), Expect = 0.54
 Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 6/39 (15%)
 Frame = +3

Query: 519 PPGASMP---GAPHPPDMGAWNQMSLPP---PPGSAPVI 617
           P G  +P   GAP PP     N   +PP    PGS P +
Sbjct: 404 PAGGQLPPSAGAPMPPIPNMSNMSGMPPLPNMPGSMPTM 442



 Score = 23.0 bits (47), Expect = 3.8
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +3

Query: 522 PGASMPGAPHPPDMGAWNQMSLPPPPGSAP 611
           P  S   +P  P  G+    S  PPPG  P
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPP 52


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 25.4 bits (53), Expect = 0.72
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = -1

Query: 321 HFSGATGCGVCPC-SDSSIFGVFS*TLVDPNHDHGDRSLYKNFCVHETSA 175
           H +G+  C  CP  S SS +G F+    DP +   ++   K  C    SA
Sbjct: 272 HEAGSHSCEACPAHSKSSDYG-FTECRCDPGYFRAEKDPKKMPCTQPPSA 320


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 567  AWNQMSLPPPP 599
            AW Q   PPPP
Sbjct: 1349 AWRQQQPPPPP 1359


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,696
Number of Sequences: 438
Number of extensions: 4585
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29509116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)