Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_I01
(861 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1604.09c |||exoribonuclease Rex4 |Schizosaccharomyces pombe|... 94 2e-20
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|... 54 2e-08
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|... 40 6e-04
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M... 36 0.010
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar... 29 0.64
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 28 1.5
SPBC18H10.10c |cwc16||complexed with Cdc5 protein Cwf16|Schizosa... 27 4.5
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 26 6.0
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 26 7.9
>SPBC1604.09c |||exoribonuclease Rex4 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 260
Score = 94.3 bits (224), Expect = 2e-20
Identities = 41/90 (45%), Positives = 62/90 (68%)
Frame = +2
Query: 512 NKFGDCIYDKFVKPREEVKDYRTIVSGIRKEDLINGEDFSIVQKEVADVIRGKILVGHSL 691
N G +YD +V+P+E+V D+RT VSG++ + + F VQ EVA ++ ++LVGH++
Sbjct: 117 NYHGHVVYDTYVRPKEKVTDWRTWVSGVKSFHMRDAPSFEKVQAEVAKILDNRVLVGHAV 176
Query: 692 KNDLNVLFLSHPKRNIRDTSKYKPFXKIQK 781
NDL VL LSHP+R IRDTS++ + K+ K
Sbjct: 177 HNDLKVLLLSHPRRMIRDTSRFSGYRKLAK 206
Score = 45.6 bits (103), Expect = 9e-06
Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 5/115 (4%)
Frame = +1
Query: 178 NANWQKLLAS--NLLMDHKEEKQAPKEQYTGKFR-RNRKTEQKINKSKDLQPTVRKFETL 348
++NW+KL + E+K + +++Y + +N + E K ++KF
Sbjct: 3 SSNWEKLKKKLDSAKSGRVEKKHSNEKKYLKSVKGKNNENENSYIVDKKRMNELKKFAKE 62
Query: 349 NLEPDQA--DGHEDDIALNDRKQAKNKITKFIAMDCEMVGIGYDGNDHMLARVSL 507
N P+ D + D + RK + K+IAMDCEMVG+ D + +LARVS+
Sbjct: 63 NDIPESQVLDAYGVDASKLTRKTNLETLGKYIAMDCEMVGVADDMS--VLARVSI 115
>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 623
Score = 54.4 bits (125), Expect = 2e-08
Identities = 34/78 (43%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Frame = +2
Query: 524 DCIYDKFVKPREEVKDYRTIVSGIRKEDLINGED-FSIVQKEVADVI-RGKILVGHSLKN 697
+ IYD+FVKP V DY T SGI +E L N S VQ + + +L+GHSL +
Sbjct: 295 EVIYDEFVKPESPVTDYVTQYSGITEEKLRNVTTVLSDVQSYLKKTVDNNTVLLGHSLNS 354
Query: 698 DLNVLFLSHPKRNIRDTS 751
DLN L +HP +I DT+
Sbjct: 355 DLNCLKFTHP--HIIDTA 370
>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 540
Score = 39.5 bits (88), Expect = 6e-04
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Frame = +2
Query: 530 IYDKFVKPREEVKDYRTIVSGIRK----EDLINGEDFSIVQKEVADVIRGKILVGHSLKN 697
I D F+KP+ ++ T SGI E I + I KE+ + + IL+GH L+N
Sbjct: 410 IMDVFIKPKGKILSLNTRFSGIHDAKELESGITMDQMYIKIKELG-MNKNTILIGHGLEN 468
Query: 698 DLNVLFLSHPK 730
DLN + L H +
Sbjct: 469 DLNAMRLIHKR 479
>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1115
Score = 35.5 bits (78), Expect = 0.010
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
Frame = +2
Query: 536 DKFVKPREEVKDYRTIVSGIRKEDL-INGEDFSIVQKEVAD------VIRGKILVGHSLK 694
D +V ++V DY T SGI DL + +++V +VA V G I VGH L+
Sbjct: 938 DDYVATDDKVTDYLTEYSGIHPGDLDPDRSPYNVVPLKVAYKKLRLLVNAGCIFVGHGLQ 997
Query: 695 NDLNVLFLSHPKRNIRDT 748
D ++ L P + DT
Sbjct: 998 KDFRIINLLVPPEQVVDT 1015
>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 598
Score = 29.5 bits (63), Expect = 0.64
Identities = 18/68 (26%), Positives = 30/68 (44%)
Frame = +1
Query: 205 SNLLMDHKEEKQAPKEQYTGKFRRNRKTEQKINKSKDLQPTVRKFETLNLEPDQADGHED 384
S+ MDH ++KQA + + K RK + ++ + VR+ N+E G
Sbjct: 520 SSTEMDH-QQKQARRRRVRRKHAEKRKQMAEKRRNSGTEQVVRQLSKSNVEVIGKGGERK 578
Query: 385 DIALNDRK 408
+A N K
Sbjct: 579 KVASNSNK 586
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 28.3 bits (60), Expect = 1.5
Identities = 19/62 (30%), Positives = 31/62 (50%)
Frame = +1
Query: 247 KEQYTGKFRRNRKTEQKINKSKDLQPTVRKFETLNLEPDQADGHEDDIALNDRKQAKNKI 426
K++Y K RN +++ K + +PT + + NL + +EDDI DRKQ +
Sbjct: 812 KQEYLTK--RNFESKLKSSAVSSRKPTFNEVKPANLLAEDLSDNEDDI---DRKQGLFSL 866
Query: 427 TK 432
K
Sbjct: 867 AK 868
>SPBC18H10.10c |cwc16||complexed with Cdc5 protein
Cwf16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 26.6 bits (56), Expect = 4.5
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = +1
Query: 265 KFRRNRKTEQKINKSKDLQPTVRKFETLNLEPDQADGHEDDIALNDRKQAKNKITK 432
+FR +K E+K ++KDL R +++ P + + + L D + KNK +
Sbjct: 163 QFRERKKIEKK-QEAKDLSLKNRAALDIDILPPSSSDKDKALLLLDNELGKNKFIR 217
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 26.2 bits (55), Expect = 6.0
Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
Frame = -3
Query: 556 TGLHKLVVYAVTKFIXLK--ILWLT 488
TG+ + VVYA+TKFI ++ W+T
Sbjct: 627 TGVRRSVVYALTKFISVQTSCSWIT 651
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 25.8 bits (54), Expect = 7.9
Identities = 17/64 (26%), Positives = 29/64 (45%)
Frame = +1
Query: 178 NANWQKLLASNLLMDHKEEKQAPKEQYTGKFRRNRKTEQKINKSKDLQPTVRKFETLNLE 357
NAN+ +L L H+ + + FR +Q + KDL+ + + + L L+
Sbjct: 710 NANFHRLEQEIQLKQHELTLLIEQRETDSSFRLLSDYQQYKDDVKDLKQRLPELDRLILQ 769
Query: 358 PDQA 369
DQA
Sbjct: 770 SDQA 773
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,781,803
Number of Sequences: 5004
Number of extensions: 53823
Number of successful extensions: 156
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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