Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_I01
(861 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0490 - 17724878-17725045,17725264-17725342,17725434-177254... 106 3e-23
12_01_0552 + 4469009-4469080,4470052-4470117,4470808-4470941,447... 51 1e-06
04_04_1390 - 33184233-33184478,33184601-33184705,33184783-331848... 51 1e-06
02_05_0476 + 29337124-29337158,29338460-29338669,29338760-293389... 48 1e-05
03_05_0226 - 22115285-22115404,22115477-22116661,22117037-221178... 31 1.2
06_01_0642 + 4658771-4659248,4659322-4660208 30 2.1
01_01_0045 - 330630-331274 29 3.6
03_05_0169 + 21474655-21474771,21474879-21474971,21475553-214756... 28 8.3
02_03_0303 - 17506392-17506399,17507055-17507286,17507390-175074... 28 8.3
>08_02_0490 -
17724878-17725045,17725264-17725342,17725434-17725498,
17725569-17725657,17725750-17725858,17725969-17726047,
17727247-17727512
Length = 284
Score = 106 bits (254), Expect = 3e-23
Identities = 48/100 (48%), Positives = 73/100 (73%)
Frame = +2
Query: 473 MEMITC*PEYL*XNKFGDCIYDKFVKPREEVKDYRTIVSGIRKEDLINGEDFSIVQKEVA 652
ME + C L N +G+ +YD++ +P E + DYRT +SGIR + + +DF +VQK+VA
Sbjct: 106 MESVNCCG--LKVNSWGNVVYDEYTRPVERIVDYRTHISGIRPKHMNKAKDFWVVQKDVA 163
Query: 653 DVIRGKILVGHSLKNDLNVLFLSHPKRNIRDTSKYKPFXK 772
++I+G+ILVGH+L +DL VL L HPK++IRDTS+Y+ F +
Sbjct: 164 ELIKGRILVGHALHHDLKVLLLGHPKKDIRDTSEYEVFRR 203
>12_01_0552 +
4469009-4469080,4470052-4470117,4470808-4470941,
4471073-4471179,4471695-4471802,4471879-4471949,
4472126-4472185,4472264-4472319,4472663-4472723,
4472809-4473076,4473174-4473355,4473444-4473736,
4474048-4474138
Length = 522
Score = 51.2 bits (117), Expect = 1e-06
Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Frame = +2
Query: 521 GDCIYDKFVKPREEVKDYRTIVSGIRKEDLIN-GEDFSIVQKEVADVI-RGKILVGHSLK 694
G+ + DK VKP + DY T SGI E L + +Q+E ++ + +LVGHSL+
Sbjct: 205 GEVVLDKLVKPANPITDYNTRFSGITAEMLADVTTTLQEIQEEFVGLVHKETVLVGHSLE 264
Query: 695 NDLNVLFLSH 724
NDL L +SH
Sbjct: 265 NDLMALRISH 274
>04_04_1390 -
33184233-33184478,33184601-33184705,33184783-33184890,
33184967-33185101,33185263-33185363,33185495-33185564,
33185642-33185758,33186001-33186138,33186371-33186439,
33186556-33186645,33186758-33186940,33187020-33187052
Length = 464
Score = 50.8 bits (116), Expect = 1e-06
Identities = 28/62 (45%), Positives = 41/62 (66%), Gaps = 3/62 (4%)
Frame = +2
Query: 536 DKFVKPREEVKDYRTIVSGIRKEDLINGEDFSI--VQKEVADVI-RGKILVGHSLKNDLN 706
D+ V P + V DYRT ++G+ K+DL G S+ VQK + ++ +GKIL+GHSL DL+
Sbjct: 175 DELVNPLKAVADYRTSITGLSKKDL-KGVTCSLVDVQKSLKKLLSKGKILIGHSLSKDLH 233
Query: 707 VL 712
L
Sbjct: 234 AL 235
>02_05_0476 +
29337124-29337158,29338460-29338669,29338760-29338936,
29338937-29339165
Length = 216
Score = 47.6 bits (108), Expect = 1e-05
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 15/91 (16%)
Frame = +2
Query: 554 REEVKDYRTIVSGIRKEDLINGEDFSIVQKEVADVI---------------RGKILVGHS 688
RE + R ++GIR E L + +VQ+ + D++ R +ILVGH
Sbjct: 5 RESSETLRYEMTGIRPEYLRDAMPLKLVQRRIQDILCNGEPLWKIRPRSSGRARILVGHG 64
Query: 689 LKNDLNVLFLSHPKRNIRDTSKYKPFXKIQK 781
L+++L L L +P IRDT+KY P K K
Sbjct: 65 LEHELERLGLEYPAFMIRDTAKYPPLMKTSK 95
>03_05_0226 -
22115285-22115404,22115477-22116661,22117037-22117861,
22118029-22118106,22118370-22118420,22118510-22118581,
22118666-22118667,22119453-22119557,22119668-22119749,
22120178-22120227,22120514-22120567,22121084-22121164,
22121567-22121656,22121884-22121964,22122304-22122544
Length = 1038
Score = 31.1 bits (67), Expect = 1.2
Identities = 17/69 (24%), Positives = 32/69 (46%)
Frame = +1
Query: 217 MDHKEEKQAPKEQYTGKFRRNRKTEQKINKSKDLQPTVRKFETLNLEPDQADGHEDDIAL 396
M+ +EEK PK Q K ++KI KD P ++ N++ + G +
Sbjct: 1 MELEEEKDPPKHQSKIKMNSEEIKKRKIRLGKDQDPEKKEMSGKNIKSIKETGTKGQSKE 60
Query: 397 NDRKQAKNK 423
+K++K++
Sbjct: 61 LQKKESKSR 69
>06_01_0642 + 4658771-4659248,4659322-4660208
Length = 454
Score = 30.3 bits (65), Expect = 2.1
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Frame = -3
Query: 328 RLAASLCFCLFSVQFSCFYGIY--LCTAPLVLVFPLCDP*EDYSLVIFANLHL*DPSAIL 155
R+A L +V + F G+ TA L V P C P Y L+ A + DP+ L
Sbjct: 201 RMAQRLPRAATAVALNTFPGLDPPTVTAALTAVLPTCLPLGPYHLLATAPANDDDPNGCL 260
Query: 154 FGYDRQKLXAXAYESF 107
DR AY SF
Sbjct: 261 AWLDRHAPRTVAYVSF 276
>01_01_0045 - 330630-331274
Length = 214
Score = 29.5 bits (63), Expect = 3.6
Identities = 18/70 (25%), Positives = 36/70 (51%)
Frame = +1
Query: 112 SHKRKRTASDDHNQTVSLRGLINANWQKLLASNLLMDHKEEKQAPKEQYTGKFRRNRKTE 291
S K+KR S+DH+Q + Q A++L+ + + +K+ K K R+ +K E
Sbjct: 73 SDKKKRKRSEDHHQAATHVKQEQEAQQVAFAADLVAEEETDKETSK-----KNRKKKKHE 127
Query: 292 QKINKSKDLQ 321
+ ++D++
Sbjct: 128 SQQENARDVK 137
>03_05_0169 +
21474655-21474771,21474879-21474971,21475553-21475642,
21475728-21475811,21476088-21476252,21476995-21477182,
21477363-21477435,21477766-21477819,21478019-21478276,
21478891-21479097,21479293-21479396,21479809-21479953,
21480108-21480242,21480610-21480783
Length = 628
Score = 28.3 bits (60), Expect = 8.3
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = +2
Query: 587 SGIRKEDLINGEDFSIVQKEVADVIRGKILVGHSLKNDLNVLFLSHPKRNIRDTSKYKPF 766
S +R E L N + ++ + + +G I G S N + VLF +P + +D +K+ PF
Sbjct: 118 SPLRLEKLANEVTYRRMKDALVQLSKG-IQTGPSA-NLIPVLFGENPPMSSKDVAKFSPF 175
Query: 767 XK 772
K
Sbjct: 176 NK 177
>02_03_0303 -
17506392-17506399,17507055-17507286,17507390-17507461,
17507561-17508586,17509194-17509448,17510483-17510962
Length = 690
Score = 28.3 bits (60), Expect = 8.3
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -1
Query: 732 RLGCDKNRTFRSFFNECPTNILPLITSATSF*TI 631
R+ CD ++ +SF N+CP I LI T + +I
Sbjct: 319 RILCDSSKGAQSFLNKCPDMIQVLIDLTTEWKSI 352
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,735,473
Number of Sequences: 37544
Number of extensions: 294804
Number of successful extensions: 658
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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