Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_I01
         (861 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           27   0.22 
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   4.8  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   6.3  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   6.3  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 27.1 bits (57), Expect = 0.22
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = +2

Query: 482 ITC*PEYL*XNKFGDCIYDKFVKPREEVKD---YRTIVSGIRKED 607
           + C P     +   D +  K++ P+E+VK+   Y  IV  IR ED
Sbjct: 275 LACPPAIFIFDLTTDTLIRKYIIPKEQVKEDSLYTNIVVDIRNED 319


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -1

Query: 339 KFPNGWLQVF 310
           K+PN WL VF
Sbjct: 166 KYPNNWLSVF 175


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +2

Query: 524 DCIYDKFVKPREEVKDYRTI 583
           DC YDK  +P  E+     I
Sbjct: 20  DCRYDKMTRPPGEINSINPI 39


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 10/42 (23%), Positives = 21/42 (50%)
 Frame = +1

Query: 229 EEKQAPKEQYTGKFRRNRKTEQKINKSKDLQPTVRKFETLNL 354
           +EK A   + T K ++ +  E+ I    +   T  +F+T+ +
Sbjct: 144 DEKNAGNNKITMKSKKEQNAEEDIVDPVEENETYDEFDTIRI 185


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,213
Number of Sequences: 438
Number of extensions: 3638
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)