Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_H24
         (877 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyce...    32   0.093
SPAC186.07c |||hydroxyacid dehydrogenase |Schizosaccharomyces po...    27   3.5  

>SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 324

 Score = 32.3 bits (70), Expect = 0.093
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +3

Query: 681 LPRWLQDNDYLHKGHRPPLPSFSAC 755
           L  W QDN Y+  G+RPP  SF  C
Sbjct: 54  LEPWQQDNQYIISGYRPPSFSFYLC 78


>SPAC186.07c |||hydroxyacid dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 332

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 495 CPLPSTPEDQHLLDAEMAEVLKAGVLSDEIDLGALAHNAA 614
           CPL  TP+ +HL+D ++   +K GV       G L    A
Sbjct: 206 CPL--TPDTEHLVDEKLLASMKKGVKIINTSRGGLVDTKA 243


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,459,620
Number of Sequences: 5004
Number of extensions: 69421
Number of successful extensions: 158
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)