Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_H24
         (877 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ438610-4|CAD27476.1|  593|Anopheles gambiae putative transcrip...    26   1.7  
AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcript...    25   3.0  
AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript...    24   5.3  
AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcript...    24   5.3  

>AJ438610-4|CAD27476.1|  593|Anopheles gambiae putative
           transcription factor protein.
          Length = 593

 Score = 25.8 bits (54), Expect = 1.7
 Identities = 14/29 (48%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
 Frame = +3

Query: 693 LQDNDYLH--KGHRPPLPSFSACFXINFP 773
           LQ NDY      HR PL S    F I FP
Sbjct: 328 LQQNDYFKGSPAHRKPLLSMGISFPIFFP 356


>AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 613 PNRPKNSFAKYGRRRGTCAISDI 681
           P+ P+ S A+YG RRG   IS I
Sbjct: 537 PDSPQLSDAQYGFRRGRSTISAI 559


>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1248

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -2

Query: 573 ITRQLSKLQPFRHPTDVDPPVLKA 502
           I + L +LQP R   D DP VLK+
Sbjct: 363 IRKVLYRLQPSRTAQDRDPVVLKS 386


>AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1154

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 613 PNRPKNSFAKYGRRRGTCAISDICHV 690
           P+ P+ S A+YG RRG    S I  V
Sbjct: 532 PDSPRLSDAQYGFRRGRSTFSAIQRV 557


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 894,094
Number of Sequences: 2352
Number of extensions: 19100
Number of successful extensions: 59
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 93853377
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)