Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_H23
         (890 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32F12.03c |gpx1||glutathione peroxidase Gpx1|Schizosaccharom...    75   1e-14
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    27   2.7  

>SPBC32F12.03c |gpx1||glutathione peroxidase
           Gpx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 158

 Score = 75.4 bits (177), Expect = 1e-14
 Identities = 36/91 (39%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
 Frame = +3

Query: 357 NQFAGQEPGNPEEIVCFASERK-VKFDLFEKVDVNGDNASPLWKYLKHKQGGTLGSFIKW 533
           NQF  QEPG+ EEI  F  +   V F +  K++VNGDN  P++++LK ++       IKW
Sbjct: 65  NQFGNQEPGSDEEIAQFCQKNYGVTFPVLAKINVNGDNVDPVYQFLKSQKKQLGLERIKW 124

Query: 534 NFTKFIINKDGVPVERHGPNTDPLDLVXSLE 626
           NF KF++N+ G  +ER+   + P  L   +E
Sbjct: 125 NFEKFLVNRQGQVIERYSSISKPEHLENDIE 155



 Score = 48.8 bits (111), Expect = 1e-06
 Identities = 26/63 (41%), Positives = 35/63 (55%)
 Frame = +2

Query: 167 FTNLPVKNIKGEDVKLDVYKGHVCIIVNVASQCGLTANNYKQLNELYEQYGESKGLRILA 346
           F +L  K+  G        KG V ++VN AS+CG T   YK L  LY++Y + +G  IL 
Sbjct: 4   FYDLAPKDKDGNPFPFSNLKGKVVLVVNTASKCGFTP-QYKGLEALYQKY-KDRGFIILG 61

Query: 347 FPC 355
           FPC
Sbjct: 62  FPC 64


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +2

Query: 200 EDVKLDVYKGHVCIIVNVASQCGLTANNYKQLNELYEQYGE 322
           EDV+   YKG + +++NV   C      Y  LNEL+E   E
Sbjct: 493 EDVR-PPYKG-IILMLNVLDSCTNYVGRYTFLNELFEYLQE 531


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,153,980
Number of Sequences: 5004
Number of extensions: 61966
Number of successful extensions: 148
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)