Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_H23
(890 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0755 + 27812097-27812144,27812377-27812462,27812976-278130... 114 8e-26
02_05_0224 + 26948263-26948520,26948831-26948907,26949597-269496... 112 4e-25
11_03_0111 - 10129531-10129563,10129645-10129812,10130366-101304... 109 2e-24
06_01_0600 + 4332886-4332896,4332968-4333067,4333588-4333664,433... 98 9e-21
03_03_0010 + 13712339-13712392,13712506-13712582,13712715-137127... 90 3e-18
04_04_1636 + 34951841-34954322,34954440-34954627,34955737-349558... 60 3e-09
05_04_0033 - 17369134-17369321,17369522-17370355,17370429-17373042 30 2.1
10_08_0731 + 20161962-20163628,20163721-20163862,20164181-201644... 29 3.8
>04_04_0755 +
27812097-27812144,27812377-27812462,27812976-27813037,
27813256-27813374,27813511-27813678,27813766-27813798
Length = 171
Score = 114 bits (275), Expect = 8e-26
Identities = 54/107 (50%), Positives = 75/107 (70%), Gaps = 3/107 (2%)
Frame = +3
Query: 318 ERAKVSAFWLSLV--NQFAGQEPGNPEEIVCFASER-KVKFDLFEKVDVNGDNASPLWKY 488
E+ KV F + NQF GQEPG+ EEIV FA R K ++ +F+KVDVNG+NA+PL+KY
Sbjct: 60 EKYKVQGFEILAFPCNQFGGQEPGSNEEIVQFACTRFKAEYPIFDKVDVNGNNAAPLYKY 119
Query: 489 LKHKQGGTLGSFIKWNFTKFIINKDGVPVERHGPNTDPLDLVXSLEK 629
LK +GG G IKWNF+KF+++K+G V+R+ P T PL + ++K
Sbjct: 120 LKSNKGGLFGDSIKWNFSKFLVDKEGRVVDRYAPTTSPLSIEKDIKK 166
Score = 79.4 bits (187), Expect = 4e-15
Identities = 37/65 (56%), Positives = 48/65 (73%)
Frame = +2
Query: 161 HPFTNLPVKNIKGEDVKLDVYKGHVCIIVNVASQCGLTANNYKQLNELYEQYGESKGLRI 340
H FT V++ G+DV L YKG V +IVNVASQCGLT +NY +L++LYE+Y + +G I
Sbjct: 11 HDFTVKGVQDASGKDVNLSTYKGKVLLIVNVASQCGLTNSNYTELSQLYEKY-KVQGFEI 69
Query: 341 LAFPC 355
LAFPC
Sbjct: 70 LAFPC 74
>02_05_0224 +
26948263-26948520,26948831-26948907,26949597-26949658,
26949797-26949915,26950326-26950493,26950587-26950619
Length = 238
Score = 112 bits (269), Expect = 4e-25
Identities = 49/92 (53%), Positives = 67/92 (72%), Gaps = 1/92 (1%)
Frame = +3
Query: 357 NQFAGQEPGNPEEIVCFASER-KVKFDLFEKVDVNGDNASPLWKYLKHKQGGTLGSFIKW 533
NQF GQEPG EEIV FA R K ++ +F+KVDVNGDN +P++K+LK +GG G IKW
Sbjct: 142 NQFGGQEPGTNEEIVQFACTRFKAEYPIFDKVDVNGDNTAPIYKFLKSSKGGLFGDNIKW 201
Query: 534 NFTKFIINKDGVPVERHGPNTDPLDLVXSLEK 629
NF+KF+++K+G VER+ P T PL + ++K
Sbjct: 202 NFSKFLVDKEGRVVERYAPTTSPLSMEKDIKK 233
Score = 76.6 bits (180), Expect = 3e-14
Identities = 37/65 (56%), Positives = 48/65 (73%)
Frame = +2
Query: 161 HPFTNLPVKNIKGEDVKLDVYKGHVCIIVNVASQCGLTANNYKQLNELYEQYGESKGLRI 340
H FT VK+ G+DV L +KG V +IVNVASQCGLT +NY +L++LYE+Y + +G I
Sbjct: 81 HDFT---VKDASGKDVDLSTFKGKVLLIVNVASQCGLTNSNYTELSQLYEKY-KDQGFEI 136
Query: 341 LAFPC 355
LAFPC
Sbjct: 137 LAFPC 141
>11_03_0111 -
10129531-10129563,10129645-10129812,10130366-10130484,
10130589-10130650,10131043-10131119,10131659-10131838
Length = 212
Score = 109 bits (263), Expect = 2e-24
Identities = 50/92 (54%), Positives = 66/92 (71%), Gaps = 1/92 (1%)
Frame = +3
Query: 357 NQFAGQEPGNPEEIVCFASER-KVKFDLFEKVDVNGDNASPLWKYLKHKQGGTLGSFIKW 533
NQFAGQEPG+ EEI R K +F +F+K+DVNG A+PL+K+LK ++GG LG IKW
Sbjct: 116 NQFAGQEPGSNEEIEQTVCTRFKAEFPIFDKIDVNGKEAAPLYKFLKSQKGGFLGDGIKW 175
Query: 534 NFTKFIINKDGVPVERHGPNTDPLDLVXSLEK 629
NFTKF++ KDG VER+ P T PL + ++K
Sbjct: 176 NFTKFLVGKDGKVVERYAPTTSPLKIENDIQK 207
Score = 86.6 bits (205), Expect = 2e-17
Identities = 41/61 (67%), Positives = 50/61 (81%)
Frame = +2
Query: 173 NLPVKNIKGEDVKLDVYKGHVCIIVNVASQCGLTANNYKQLNELYEQYGESKGLRILAFP 352
++ VK+IKG DVKL Y+G V +IVNVAS+CGLT +NYK+LN LYE+Y E KGL ILAFP
Sbjct: 56 DISVKDIKGNDVKLSEYEGKVLLIVNVASKCGLTNSNYKELNVLYEKYKE-KGLEILAFP 114
Query: 353 C 355
C
Sbjct: 115 C 115
>06_01_0600 +
4332886-4332896,4332968-4333067,4333588-4333664,
4333774-4333835,4334016-4334134,4334237-4334404,
4335004-4335123
Length = 218
Score = 97.9 bits (233), Expect = 9e-21
Identities = 43/86 (50%), Positives = 58/86 (67%), Gaps = 1/86 (1%)
Frame = +3
Query: 357 NQFAGQEPGNPEEIVCFASER-KVKFDLFEKVDVNGDNASPLWKYLKHKQGGTLGSFIKW 533
NQF QEPG+ +I FA R K +F +F+KVDVNG N +P++K+LK GG LG +KW
Sbjct: 93 NQFGAQEPGSNPQIKQFACTRFKAEFPIFDKVDVNGPNTAPIYKFLKSSAGGFLGDLVKW 152
Query: 534 NFTKFIINKDGVPVERHGPNTDPLDL 611
NF KF+++K G VER+ P T P +
Sbjct: 153 NFEKFLVDKTGKVVERYPPTTSPFQI 178
Score = 70.9 bits (166), Expect = 1e-12
Identities = 32/57 (56%), Positives = 43/57 (75%)
Frame = +2
Query: 185 KNIKGEDVKLDVYKGHVCIIVNVASQCGLTANNYKQLNELYEQYGESKGLRILAFPC 355
++I G+DV L +KG +IVNVASQCGLT NY +L+ LYE+Y +++G ILAFPC
Sbjct: 37 QDIDGKDVALSKFKGRALLIVNVASQCGLTTANYTELSHLYEKY-KTQGFEILAFPC 92
>03_03_0010 +
13712339-13712392,13712506-13712582,13712715-13712776,
13713231-13713349,13714928-13715095,13715183-13715212
Length = 169
Score = 89.8 bits (213), Expect = 3e-18
Identities = 45/95 (47%), Positives = 65/95 (68%), Gaps = 5/95 (5%)
Frame = +3
Query: 357 NQFAGQEPGNPEEIVCFASER-KVKFDLFEKVDVNGDNASPLWKYLKHKQGGTLGSFIKW 533
NQF QEPG+ ++I FA R K ++ +F+KV VNG +A+PL+K+LK + G GS IKW
Sbjct: 74 NQFLRQEPGSDQQIKDFACTRFKAEYPVFQKVRVNGPDAAPLYKFLKASKPGLFGSRIKW 133
Query: 534 NFTKFIINKDGVPVERHGPNTDPL----DLVXSLE 626
NFTKF+I+K+G + R+ T PL D++ +LE
Sbjct: 134 NFTKFLIDKNGKVINRYSTATSPLSFEKDILKALE 168
Score = 72.5 bits (170), Expect = 4e-13
Identities = 35/65 (53%), Positives = 45/65 (69%)
Frame = +2
Query: 161 HPFTNLPVKNIKGEDVKLDVYKGHVCIIVNVASQCGLTANNYKQLNELYEQYGESKGLRI 340
H FT VK+ G++V L++YKG V I+VNVAS+CG T NY QL ELY+++ K I
Sbjct: 13 HEFT---VKDCNGKEVSLEMYKGKVLIVVNVASKCGFTETNYTQLTELYQKH-RDKDFEI 68
Query: 341 LAFPC 355
LAFPC
Sbjct: 69 LAFPC 73
>04_04_1636 + 34951841-34954322,34954440-34954627,34955737-34955838,
34956101-34956177,34956258-34956319,34956504-34956511
Length = 972
Score = 59.7 bits (138), Expect = 3e-09
Identities = 29/55 (52%), Positives = 38/55 (69%)
Frame = +2
Query: 161 HPFTNLPVKNIKGEDVKLDVYKGHVCIIVNVASQCGLTANNYKQLNELYEQYGES 325
H FT VK+ +G DV+L YKG V +IVN AS+CGLT NY +L +LY +Y E+
Sbjct: 919 HEFT---VKDARGSDVELSRYKGKVVLIVNAASRCGLTNYNYTELGQLYGKYKET 970
>05_04_0033 - 17369134-17369321,17369522-17370355,17370429-17373042
Length = 1211
Score = 30.3 bits (65), Expect = 2.1
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = -1
Query: 578 FNRNSILVYDELGKVPLDEATKGASLLMLQILPQWTGIVSIDINFLKQIK 429
F +++ + + LG+ PL G++L + + W G ++I I+ L + K
Sbjct: 383 FEEHAVKITERLGRSPLAAKVVGSNLKRVMNIDDWKGALTIKIDNLSEPK 432
>10_08_0731 + 20161962-20163628,20163721-20163862,20164181-20164490,
20164566-20166466,20166557-20166650,20166953-20167440,
20167919-20168599,20168870-20168944,20170148-20170210,
20170588-20170633,20171373-20171420,20171484-20171557
Length = 1862
Score = 29.5 bits (63), Expect = 3.8
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +1
Query: 343 GFPLLISLLVKSLAIQKR*FALPLSVKSNLICLRKLMSMETMPVHCGSI 489
G P+LI+LLV AI + + VK+ ++ LRKL ++P S+
Sbjct: 1115 GVPVLIALLVGKAAIDGQSISSDDHVKNAIVVLRKLFKDASVPDPVASV 1163
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,411,384
Number of Sequences: 37544
Number of extensions: 366547
Number of successful extensions: 959
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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