Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_H22
         (893 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        27   0.20 
S73230-1|AAB30812.1|   35|Tribolium castaneum twist protein.           25   0.80 
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    25   0.80 

>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 27.1 bits (57), Expect = 0.20
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 460 TVPINSSTLCATRTETGLLCSSRK 531
           T+ INS T+C T +  G+ C  +K
Sbjct: 146 TMEINSDTMCVTFSNLGIQCVKKK 169


>S73230-1|AAB30812.1|   35|Tribolium castaneum twist protein.
          Length = 35

 Score = 25.0 bits (52), Expect = 0.80
 Identities = 11/31 (35%), Positives = 22/31 (70%)
 Frame = +1

Query: 550 QQKTENLXTCFLNLKQSFPTVESANNLSLVE 642
           +Q+T++L   F +L++S PT+ S + LS ++
Sbjct: 6   RQRTQSLNEAFASLRKSIPTMPS-DKLSKIQ 35


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 25.0 bits (52), Expect = 0.80
 Identities = 11/31 (35%), Positives = 22/31 (70%)
 Frame = +1

Query: 550 QQKTENLXTCFLNLKQSFPTVESANNLSLVE 642
           +Q+T++L   F +L++S PT+ S + LS ++
Sbjct: 106 RQRTQSLNEAFASLRKSIPTMPS-DKLSKIQ 135


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,973
Number of Sequences: 336
Number of extensions: 3197
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24823920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)