Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_H18
         (878 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q11I12 Cluster: Cation transporter; n=7; Rhizobiales|Re...    33   7.2  
UniRef50_UPI0000E46F88 Cluster: PREDICTED: hypothetical protein;...    33   9.6  
UniRef50_Q9G8N7 Cluster: Haem lyase; n=1; Naegleria gruberi|Rep:...    33   9.6  

>UniRef50_Q11I12 Cluster: Cation transporter; n=7; Rhizobiales|Rep:
           Cation transporter - Mesorhizobium sp. (strain BNC1)
          Length = 510

 Score = 33.5 bits (73), Expect = 7.2
 Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
 Frame = +2

Query: 230 FFFLILIRKEINTNTIPYNCLRVYLAYYVVIILRACLRMPMIDVLIFLFYLTNAFFTALT 409
           F  LIL   +   + +    +RV+L Y VVI+L   ++  + D + F   +T A F   +
Sbjct: 279 FSILILFVVQGRLDALRDPQIRVFLGYLVVIVLALAVQRRIADDVPFAEAVTTAAFNITS 338

Query: 410 VIILITF---DIPILGPKCDLNAFFA 478
           ++    F   D  + GP     AFFA
Sbjct: 339 IVSTTGFASEDYTLWGPFAVTIAFFA 364


>UniRef50_UPI0000E46F88 Cluster: PREDICTED: hypothetical protein;
           n=1; Strongylocentrotus purpuratus|Rep: PREDICTED:
           hypothetical protein - Strongylocentrotus purpuratus
          Length = 290

 Score = 33.1 bits (72), Expect = 9.6
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +2

Query: 296 VYLAYYVVIILRACLRMPMIDVLIFLFYLTNAFFTALTVIILITFDIPI 442
           +Y++Y V +IL  CL   +   +I L       F  LTV++ + F++P+
Sbjct: 61  IYVSYLVAVILTICL---VASAMILLIGTVKTNFANLTVLVHVLFNVPL 106


>UniRef50_Q9G8N7 Cluster: Haem lyase; n=1; Naegleria gruberi|Rep:
           Haem lyase - Naegleria gruberi
          Length = 474

 Score = 33.1 bits (72), Expect = 9.6
 Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
 Frame = +2

Query: 230 FFFLILIRKEINTNTIPYNCLRVYLA-------YYVVIILRACLRMPMIDVLIFLFYLTN 388
           FFF I I   +N N I    + VYL+       YYV+ +    L    I ++   FY+ N
Sbjct: 274 FFFTIYIYIYVNINIIFMYYILVYLSILLCILFYYVIRLDYVYLVCSSIYLICIFFYINN 333

Query: 389 AF-FTALTVIILITFDI 436
            + +T L  II+ T+ I
Sbjct: 334 IYIYTILYTIIIYTYTI 350


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 632,965,411
Number of Sequences: 1657284
Number of extensions: 11315047
Number of successful extensions: 21304
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21290
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 78702453312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)