Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_H18
         (878 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    28   0.099
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    28   0.099
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    24   2.1  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    24   2.1  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   4.9  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   4.9  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 28.3 bits (60), Expect = 0.099
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 659 VCTFVCDLSQNEIYLTLRKRLEILFNESWXHVN 757
           VC+  C L  N+I LT+R  LE+ F     H+N
Sbjct: 241 VCSGNCKL--NDILLTVRPHLELTFENILSHIN 271


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 28.3 bits (60), Expect = 0.099
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 659 VCTFVCDLSQNEIYLTLRKRLEILFNESWXHVN 757
           VC+  C L  N+I LT+R  LE+ F     H+N
Sbjct: 241 VCSGNCKL--NDILLTVRPHLELTFENILSHIN 271


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = +1

Query: 265 Y*YYSV*LF--ESVSRILCSHYFTSVPAYADDRCFNIFI 375
           Y  Y + +F  E+  R +C      VP+ ADDR F+  I
Sbjct: 150 YGEYGIEVFTREATERNVCIAAAVKVPSAADDRMFDDII 188


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = +1

Query: 265 Y*YYSV*LF--ESVSRILCSHYFTSVPAYADDRCFNIFI 375
           Y  Y + +F  E+  R +C      VP+ ADDR F+  I
Sbjct: 240 YGEYGIEVFTREATERNVCIAAAVKVPSAADDRMFDDII 278


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 6/41 (14%)
 Frame = +2

Query: 266 TNTIPYNCLRVYL------AYYVVIILRACLRMPMIDVLIF 370
           TNT  Y+CL+V L      +YY++ I   C  + ++  + F
Sbjct: 223 TNTGEYSCLKVDLLFKREFSYYLIQIYIPCCMLVIVSWVSF 263


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 6/41 (14%)
 Frame = +2

Query: 266 TNTIPYNCLRVYL------AYYVVIILRACLRMPMIDVLIF 370
           TNT  Y+CL+V L      +YY++ I   C  + ++  + F
Sbjct: 223 TNTGEYSCLKVDLLFKREFSYYLIQIYIPCCMLVIVSWVSF 263


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,262
Number of Sequences: 438
Number of extensions: 3897
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)