Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_H17
         (895 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    35   0.018
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    28   1.6  
SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c...    28   2.1  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    27   2.7  
SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces ...    27   3.6  
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    27   4.8  
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po...    27   4.8  
SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces...    27   4.8  
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo...    27   4.8  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    27   4.8  
SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch...    26   8.3  
SPAC1D4.03c |aut12||autophagy associated protein Aut12|Schizosac...    26   8.3  
SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomy...    26   8.3  
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom...    26   8.3  
SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom...    26   8.3  
SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces pombe...    26   8.3  

>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 34.7 bits (76), Expect = 0.018
 Identities = 23/110 (20%), Positives = 54/110 (49%), Gaps = 2/110 (1%)
 Frame = +3

Query: 78  CKIEKDGRVNCSQIIYNDLKAWQTNRLSLEDQIRQLRTKLEDLKEIKRHLK--ITKPITE 251
           CK+E+   + C + ++ +    +T  +S ED+  Q RT+L+ ++E   H +  +      
Sbjct: 66  CKLEESKGIICQENLHTEGAKSKTENISGEDKSSQRRTRLKQIQEFISHRRSFLNSNANS 125

Query: 252 IHTLNTPEISSHIHNKTAIYEQTSKEHLKKTRMHKLKTKQKNNTLIDKKM 401
           + +      ++H+ N  +  + ++KE   KTR  +   +  + +L  K++
Sbjct: 126 VESEKILAENNHMFNVKS--KLSNKESFIKTRRPRTNGELSDLSLQPKRI 173


>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 12/35 (34%), Positives = 23/35 (65%)
 Frame = +3

Query: 456 FDIQLQNESKLDESTHTYMNIGEGVPLKENLTSIY 560
           F I + +++++ E+TH Y N GEG  +K +L  ++
Sbjct: 277 FIILILSDARIKENTHLYAN-GEGQHIKNHLLELF 310


>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 801

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 29/130 (22%), Positives = 54/130 (41%), Gaps = 11/130 (8%)
 Frame = +3

Query: 159 SLEDQIRQLRTKLEDLKEIKRHLKITKPITEIHTLNTPEISSH-IHNKTAIYEQTSKEHL 335
           SLE+ + +L  + EDL  +K+  ++   I + + L   E     +  +T+I     +E  
Sbjct: 173 SLENIVTKLDLESEDLMRLKKQEQLDDEIAKKYLLGQQEAEEPLVQQQTSIVNPEKEEVT 232

Query: 336 KKTRMHKLKTKQKNNTLIDKKMRQSNEYVF----PTVHAKAKDV------FDIQLQNESK 485
           K   +  L+ +       +  +  + E VF    P V A   D+      F I  + ++ 
Sbjct: 233 KTENIKSLEGELMGTISAELHLFDAVEEVFILQDPNVEASVFDLGDWNYWFTISTEEKTW 292

Query: 486 LDESTHTYMN 515
           L +S    MN
Sbjct: 293 LSQSVDADMN 302


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +3

Query: 87  EKDGRVNCSQIIYNDLKAWQTNRLSLEDQIRQLRTKLEDLKEIKRHLKI 233
           E+D   +  Q + +D  + +    SL +QI  LRT+  ++ E K HL++
Sbjct: 436 ERDVLESKLQTLEDDNNSLRLMTSSLGNQIESLRTQNREIDEEKNHLRL 484


>SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 655

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = +3

Query: 261 LNTPEISSHIHNKTAIYEQTSKEHLKKTRMHKLKTKQKNNTLIDKKMRQSNEY 419
           L+TPE+ ++  +K A   Q  +  ++       KTK+K++  +  K+  SNEY
Sbjct: 261 LDTPELRAYCVDKYA--SQIMRAFIRIDFERSKKTKKKHDPRLVSKLLLSNEY 311


>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 309 YEQTSKEHLKKTRMHKLKTKQKNNTLID 392
           YE++ K H KK  +H+ KTK   +  ID
Sbjct: 661 YEESLKRHAKK--LHEKKTKSSQDATID 686


>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 665

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = +3

Query: 249 EIHTLNTPEISS-HIHNKTAIYEQTSKEHLKKTRMHK 356
           E H+  TP  +S H +N   I      EH++  R HK
Sbjct: 423 EWHSHTTPRSTSKHENNLNNITNSAKNEHIRSQRQHK 459


>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 224

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 27/123 (21%), Positives = 52/123 (42%)
 Frame = +3

Query: 165 EDQIRQLRTKLEDLKEIKRHLKITKPITEIHTLNTPEISSHIHNKTAIYEQTSKEHLKKT 344
           +D I+++   +     +++ L+    I +  T  T   +S + ++ A YE+  KEH    
Sbjct: 37  QDAIKKVMDDIHRSNLLRQELEKNLSIPKSATATT---ASAVSSELASYEKPKKEH---- 89

Query: 345 RMHKLKTKQKNNTLIDKKMRQSNEYVFPTVHAKAKDVFDIQLQNESKLDESTHTYMNIGE 524
              KL+  +K  TL D  +  S+     T+           L  + + +E+  T  N  E
Sbjct: 90  --PKLRPSKKKATLDDWDIPTSSTET-DTISTTHTSYIPTLLAKQEENEETKETTTNKNE 146

Query: 525 GVP 533
            +P
Sbjct: 147 SLP 149


>SPCC1682.03c |mug174||meiotically upregulated gene
           Mug174|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 626

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 33/155 (21%), Positives = 57/155 (36%), Gaps = 6/155 (3%)
 Frame = +3

Query: 6   ISXXPHYREFLKIYLLNTNESSLECKIEKDGRVNCSQIIYNDLKAWQTNRLSLEDQIRQL 185
           +S    Y    + Y LNT +S +  + +   + N  Q  Y  L A Q +   L      +
Sbjct: 180 LSSISQYANMPENYALNTKKSKISNENDTIFKANFQQNKYESLHAKQISASDLSLHQEFV 239

Query: 186 RTKLEDLKEIKRHLKI-TKPITEIHTLNTPEISSHIHNKTAIYEQTSK-----EHLKKTR 347
              +    E+   L   +K  T   + ++   SS   + ++    TS      E     R
Sbjct: 240 SASIVQQPELNSLLTSQSKNSTPSESDSSSSESSSSVSDSSDLSSTSDSSSGDESSDTAR 299

Query: 348 MHKLKTKQKNNTLIDKKMRQSNEYVFPTVHAKAKD 452
                T   NN  +   +  +NE+ FP    KA++
Sbjct: 300 QSSSDTISSNNVSVSVSLNTANEFSFPQGTFKAEN 334


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 19/75 (25%), Positives = 33/75 (44%)
 Frame = +3

Query: 174  IRQLRTKLEDLKEIKRHLKITKPITEIHTLNTPEISSHIHNKTAIYEQTSKEHLKKTRMH 353
            I  L+ +LE  KE+   L ITK      T +  E  +  H K  + E+ +     +    
Sbjct: 845  INNLQNQLESTKEVANELTITKERVLQLTNDLQEEQALAHEKDILVERANSR--VEVVHE 902

Query: 354  KLKTKQKNNTLIDKK 398
            +L + +   T+ D+K
Sbjct: 903  RLSSLENQVTIADEK 917


>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -1

Query: 496 DSSSLDSFCN*ISKTSLALACTVGKTYSFDCLIFLSINVLFFCFV 362
           D+    S  N + K +L ++  V K  SF  L+F  +  +++C V
Sbjct: 249 DTEEQVSRANALFKNTLGISIEVTKDMSFRTLVFNFLTSVYYCAV 293


>SPAC1D4.03c |aut12||autophagy associated protein
           Aut12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 10/44 (22%), Positives = 20/44 (45%)
 Frame = +3

Query: 264 NTPEISSHIHNKTAIYEQTSKEHLKKTRMHKLKTKQKNNTLIDK 395
           +TPE+ SH+ N   +      ++     +    +   NNT +D+
Sbjct: 54  STPELRSHVENVEQLLSDILHDNSSPLNVSTSVSSSSNNTAVDE 97


>SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 764

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
 Frame = +3

Query: 174 IRQLRTKLEDLKEIKRHLKITKP-ITEIHTLNTPEISSHIHNKTAIYEQTSKEHLKKTRM 350
           I   ++ ++ L  + R+     P + +IH+   P +S       AI +   K+HL     
Sbjct: 675 IENSKSDMKLLNVLSRYTSCIGPGLFDIHSPRVPPVSEFKERIDAIVKHVPKDHLWLNPD 734

Query: 351 HKLKTKQKNNTLIDKK 398
             LKT+    T  D K
Sbjct: 735 CGLKTRGWPETTADLK 750


>SPBC1A4.07c |||U3 snoRNP-associated protein
           Sof1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 18/84 (21%), Positives = 36/84 (42%)
 Frame = +3

Query: 144 QTNRLSLEDQIRQLRTKLEDLKEIKRHLKITKPITEIHTLNTPEISSHIHNKTAIYEQTS 323
           + NRL   D +R+    + +++ I RH  +   + +   +   EI     N     E+  
Sbjct: 358 EENRLKYLDSLRERYKHIPEIRRIARHRHLPTNVKKAAEIKREEI-----NSLKRREENI 412

Query: 324 KEHLKKTRMHKLKTKQKNNTLIDK 395
           + H KK  +   K ++++   I K
Sbjct: 413 RRHSKKGAVPYEKERERHVVGIQK 436


>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 3/97 (3%)
 Frame = +3

Query: 138 AWQTNRLSLEDQIRQLRTKLEDLK--EIKRHLKITKPITEIHTLNTPEISSHIHNKTAIY 311
           +W+  +  L+ +IR+   KL+D+K  +I +   +  P  E+ T    E++S+   K   +
Sbjct: 55  SWKLAQKELDLKIREYEQKLKDVKLNDINKKSPLNIP-DEVWTKFISEVNSYDKEKEN-H 112

Query: 312 EQTSKEHLKKTRMHKLKTKQKNNT-LIDKKMRQSNEY 419
             T    L++T   K+         L+  K   SN Y
Sbjct: 113 LSTGNHELRRTTPLKIGPLLLTRIGLLKSKNTASNNY 149


>SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 264

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
 Frame = +2

Query: 665 TYYGNRNYDCFLKNFDTTSN----KKVSEEYTTEKDTTYFT 775
           T YG   Y     N+    +    KK+S  Y+TEKD   F+
Sbjct: 70  TSYGYSPYSSSSSNYSARHSDKYRKKISRSYSTEKDIEIFS 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,624,028
Number of Sequences: 5004
Number of extensions: 79556
Number of successful extensions: 294
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 294
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)