Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_H14
         (899 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    48   2e-04
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    47   8e-04
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru...    43   0.012
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    41   0.049
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    38   0.35 
UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ...    37   0.81 
UniRef50_A6DNS7 Cluster: Probable ECF sigma factor; n=1; Lentisp...    34   5.7  
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h...    33   7.5  

>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 48.4 bits (110), Expect = 2e-04
 Identities = 22/33 (66%), Positives = 24/33 (72%)
 Frame = +3

Query: 624 RGEAVCVLGRSPLPRSLTRCARSXGCGERYQLT 722
           R   +C  G  PLPRSLTR ARS GCGERY+LT
Sbjct: 26  RVSRICDTGDIPLPRSLTRYARSFGCGERYRLT 58


>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 46.8 bits (106), Expect = 8e-04
 Identities = 27/54 (50%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +3

Query: 600 CINESANARGEAVCVLGRSPLPRSLTRCARSXGCGERYQL-TQRR*YGYPXXXG 758
           CI + A AR EAV VL   PL RS TRC RS GCG      +  R YG P   G
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQG 319


>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
           Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
           (SV40)
          Length = 364

 Score = 42.7 bits (96), Expect = 0.012
 Identities = 18/19 (94%), Positives = 18/19 (94%)
 Frame = +1

Query: 403 DPDMIRYIDEFGQTTTXMQ 459
           DPDMIRYIDEFGQTTT MQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 40.7 bits (91), Expect = 0.049
 Identities = 16/17 (94%), Positives = 17/17 (100%)
 Frame = +1

Query: 598 SALMNRPTRGERRFAYW 648
           +ALMNRPTRGERRFAYW
Sbjct: 25  AALMNRPTRGERRFAYW 41


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 37.9 bits (84), Expect = 0.35
 Identities = 17/17 (100%), Positives = 17/17 (100%)
 Frame = -2

Query: 649 PNTQTASPRALADSLMQ 599
           PNTQTASPRALADSLMQ
Sbjct: 332 PNTQTASPRALADSLMQ 348


>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
           root|Rep: Putative uncharacterized protein - Escherichia
           coli
          Length = 61

 Score = 36.7 bits (81), Expect = 0.81
 Identities = 16/25 (64%), Positives = 16/25 (64%)
 Frame = -1

Query: 779 TCFXXXIPXXXWITVLPPLSELIPL 705
           TC     P   WITVLPPLSEL PL
Sbjct: 26  TCSFRLYPLILWITVLPPLSELTPL 50


>UniRef50_A6DNS7 Cluster: Probable ECF sigma factor; n=1;
           Lentisphaera araneosa HTCC2155|Rep: Probable ECF sigma
           factor - Lentisphaera araneosa HTCC2155
          Length = 201

 Score = 33.9 bits (74), Expect = 5.7
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = +1

Query: 481 EICDAIALFVTIISCNKQVNNNNCIHFMFQVQGEVWEVFSALMNRPTRGERRFAYW 648
           +  DA   F+ I   N  +N+++C   + +V  +VWE  +     P RG  +F YW
Sbjct: 32  DFSDAYRRFIYIALRNNGLNHHDCEEVVQRVMIKVWEKIARFKYNPGRG--KFRYW 85


>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
           Alpha-hemolysin - Aeromonas hydrophila
          Length = 59

 Score = 33.5 bits (73), Expect = 7.5
 Identities = 20/41 (48%), Positives = 20/41 (48%)
 Frame = +2

Query: 656 SASSLTDXXXXXXXXXXXXXXHSKAVIRLSTXXXGXPXKNM 778
           SASSLTD              HSKAVIRLST       KNM
Sbjct: 19  SASSLTDSLRSVVRLRRAVSAHSKAVIRLSTESGDNAGKNM 59


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 566,336,799
Number of Sequences: 1657284
Number of extensions: 7792328
Number of successful extensions: 15124
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15123
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 81571813589
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)